A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

BMC Genomics

Table 2 Selected properties for the clusters of pathogen-associated proteins

For each feature in the 35-dimensional feature vector, Mann–Whitney U tests were used to test whether the distribution within a cluster is identical to the full background distribution for all clusters and highly significant p-values for both directions (lesser ↓ and greater ↑, p-value < 2.2e-16) are shown. Secretion refers to the predicted SignalP score and WoLF PSORT extracellular score. The following amino acid membership are used: tiny (A,C,G,S,T), small (A,C,D,G,N,P,S,T,V), aliphatic (A,I,L,V), aromatic (F,H,W,Y), polar (D,E,H,K,N,Q,R,S,T), charged (D,E,H,K,R), basic (H, K, R) and acidic (D, E).

ISSN: 1471-2164