Table 1 Summary of 454 sequencing data
| Â | Temperature | Hypoxia | ||
|---|---|---|---|---|
|  | 13°C (EH1) | 19°C (EH2) | Normal O2 | Low O2 |
Tissue | Liver | Liver | Liver | Liver |
Individuals | 6 | 6 | 9 | 9 |
Method | SSH library | SSH library | Normalized library | Normalized library |
Sequencing | FLX 454 GS-titanium | FLX 454 GS-titanium | FLX 454 GS-titanium | FLX 454 GS-titanium |
Platform | CEES, UiO | CEES, UiO | LGC Genomics, Munich | LGC Genomics, Munich |
Reads | 334403 | 439322 | 375347 | 401270 |
All contigs | 14325 | 5659 | 10827 | 11478 |
Large contigs | 2289 | 1790 | 7817 | 8498 |
IPA input >50 reads | 754 | 1229 | 1466 | 1591 |