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Table 1 Ivy Center fusions

From: Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data

Ivy Center sample id Fusion gene symbol (5′ → 3′) Fusion junction reads Genomic location (hg19) chromosome (strand) Type
(TCGA sample id) Fusion transcripts (5′ → 3′) (UAR-genomic sequence without gene annotation) WT junction reads (5′,3′) Coordinates (5′,3′)  
SN214 MON2 → MARS 47 12q14 (+/+) In-frame fusion
(TCGA-74-6583) (NM_015026 → NM_004990) (6, 3) (62981936, 57883990)  
SN214 MDM1 → UAR 196 12q15 (−/−) Extended 3′ UTR
(TCGA-74-6583) (NM_020128 → NA) (4, NA) (68717849, 68876024)  
SN214 SLC35E3 → UAR 470 12q15 (+/−) Truncated gene
(TCGA-74-6583) (NM_018656 → NA) (0, NA) (69145972, 68489752)  
SN238 YEATS4 → SLC35E3 232 12q15 (+/+) In-frame fusion
  (NM_006530 → NM_018656) (6, 4) (69753803, 69152935)  
SN161 PIK3C2B → DSTYK 95 1q32 (−/−) In-frame fusion
  (NM_002646 → NM_199462) (3, 0) (204426856, 205119924)  
SN195-1 PLEKHA6 → PIK3C2B 23 1q32 (−/−) 5′ UTR
  (novel 5′ UTR → NM_002646) (0, 13) (204320007, 204439018)  
SN161 CREB1 → PARD3B 65 2q33 (+/+) Out-of-frame fusion
  (NM_004379 → NM_057177) (10, 1) (208442379, 205829875)  
SN214 SCFD2 → CLOCK 10 4q12 (−/−) In-frame fusion
(TCGA-74-6583) (NM_152540 → NM_004898) (4, 6) (53786892, 56301763)  
SN159 SEC61G → UAR 484 7p11 (+/−) No protein product
  (ENST00000480303 → NA) (44, NA) (51654097, 54821716)  
SN161 LANCL2 → RP11-745C15 274 7p11 (+/+) Truncated gene
  (NM_018697 → ENST00000439413) (8, 0) (55469013, 54872359)  
SN218 ZNF713 → UAR 51 7p11 (+/+) Truncated gene
  (uc003tra → NA) (2, NA) (55991300, 56082944)  
SN154 ZNF713 → UAR 14 7p11 (+/−) Truncated gene
(TCGA-74-6573) (uc003tra → NA) (10, NA) (55980418, 55945274)  
SN187 FGFR3 → TACC3 13 4p16 (+/+) In-frame fusion
(TCGA-74-6578) (NM_000142 → NM_006342) (31, 0) (1808661, 1737458)  
  1. Fusions identified in the Ivy Center SOLiD single-end dataset.