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Table 2 Fusions involving genes that partner in more than one fusion

From: Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data

Sample 5′ partner gene Genomic location 3′ partner gene Genomic location
TCGA-06-5856-01A TSFM chr12 58180073 IFNG chr12 68549194
TCGA-28-5207-01A TSFM chr12 58191066 TJAP1 chr6 43473030
TCGA-19-2624-01A PPM1H chr12 63182005 MDM2 chr12 69202987
TCGA-06-5856-01A C12orf49 chr12 117175594 MDM2 chr12 69229608
TCGA-27-1835-01A FGFR3 chr4 1808660 TACC3 chr4 1741428
TCGA-76-4925-01A FGFR3 chr4 1808660 TACC3 chr4 1739324
TCGA-74-6578 (SN187) FGFR3 chr4 1808661 TACC3 chr4 1737458
TCGA-06-0129-01A FRS2 chr12 69864309 KIF5A chr12 57957221
TCGA-41-2571-01A FRS2 chr12 69864309 DTX3 chr12 58002302
TCGA-06-0141-01A GIGYF2 chr2 233562102 ECEL1 chr2 233345866
TCGA-28-2499-01A GIGYF2 chr2 233613791 PPP1R7 chr2 242107151
TCGA-06-0187-01A HMGA2 chr12 66232348 NUP107 chr12 69109406
TCGA-06-0686-01A NUP107 chr12 69096563 RP11-123O10 chr12 67302585
TCGA-14-1034-02B ADAMTS17 chr15 100589061 LPAR1 chr9 113638001
TCGA-06-0129-01A NAA15 chr4 140222984 LPAR1 chr9 113638001
TCGA-06-0125-01A ARID1A chr1 27094489 RNF31 chr14 24624365
TCGA-06-0125-02A ARID1A chr1 27094489 RNF31 chr14 24624365
TCGA-28-2514-01A ARID1A chr1 27024031 BEND5 chr1 49202124
TCGA-19-2619-01A BCAN chr1 156628525 NTRK1 chr1 156844697
TCGA-06-5411-01A NFASC chr1 204951147 NTRK1 chr1 156844362
TCGA-06-0157-01A NFASC chr1 204797909 SOX13 chr1 204082042
TCGA-06-0210-01A NFASC chr1 204797910 PRELP chr1 203452296
TCGA-12-1597-01B NFASC chr1 204951147 RTN3 chr11 63525627
TCGA-06-5418-01A CEP85L chr6 118802941 ROS1 chr6 117641192
TCGA-14-2554-01A CEP85L chr6 118953615 SYTL3 chr6 159166511
TCGA-06-2559-01A CTDSP2 chr12 58240154 LOC100422737 chr6 107172534
TCGA-41-2571-01A CTDSP2 chr12 58240154 C12orf10 chr12 53699691
TCGA-19-2624-01A EGFR chr7 55087057 PPM1H chr12 63195939
TCGA-28-5209-01A EGFR chr7 55268105 PSPHP1 chr7 55840873
TCGA-27-1837-01A EGFR chr7 55268106 SEPT14 chr7 55863785
TCGA-28-2513-01A EGFR chr7 55268106 SEPT14 chr7 55863785
TCGA-32-5222-01A EGFR chr7 55268106 SEPT14 chr7 55863785
TCGA-12-5299-01A EGFR chr7 55087057 RP11-436 F9 chr7 54414986
TCGA-06-0219-01A EGFR chr7 55240816 RP11-745C15.2 chr7 54860605
TCGA-12-3653-01A EGFR chr7 55269474 RP11-745C15.2 chr7 54850284
TCGA-12-3652-01A VOPP1 chr7 55639963 RP11-745C15.2 chr7 54850800
TCGA-32-2638-01A LANCL2 chr7 55433921 RP11-745C15.2 chr7 54850800
SN161 LANCL2 chr7 55469013 RP11-745C15.2 chr7 54872357
TCGA-06-0211-01A LANCL2 chr7 55433921 GS1-18A18 chr7 54643985
TCGA-06-0211-01B LANCL2 chr7 55433921 GS1-18A18 chr7 54643985
TCGA-06-0211-01A LANCL2 chr7 55479782 SEPT14 chr7 55886916
TCGA-06-0211-01B LANCL2 chr7 55479782 SEPT14 chr7 55886916
TCGA-28-2513-01A LANCL2 chr7 55433922 SEPT14 chr7 55914330
TCGA-14-0817-01A LANCL2 chr7 55469012 PSPH chr7 56082822
TCGA-28-5209-01A LANCL2 chr7 55433921 RP11-310H4 chr7 55714590
TCGA-14-1829-01A SEC61G chr7 54823471 RP11-310H4 chr7 55727802
TCGA-06-0211-02A SEC61G chr7 54825187 EGFR chr7 55224225
SN159 SEC61G chr7 51654097 UAR chr7 54821716
TCGA-06-0211-01B MRPS17 chr7 56019622 RP11-436 F9 chr7 54411333
TCGA-06-5856-01A XRCC6BP1 chr12 58335421 SRRM4 chr12 119583185
TCGA-06-0138-01A YEATS4 chr12 69764754 XRCC6BP1 chr12 58339410
TCGA-26-5135-01A SLC16A7 chr12 59990016 RP11-362 K2.2 chr12 59206195
TCGA-02-2485-01A MARS chr12 57898081 RP11-362 K2.2 chr12 59195041
TCGA-74-6583 (SN214) MON2 chr12 62981936 MARS chr12 57883989
TCGA-74-6583 (SN214) SLC35E3 chr12 69145972 UAR chr12 68489752
SN238 YEATS4 chr12 69753803 SLC35E3 chr12 69152935
SN161 PIK3C2B chr1 204426856 DSTYK chr1 205119924
SN195-1 PLEKHA6 chr1 204320007 PIK3C2B chr1 204439018
SN218 ZNF713 chr7 55991300 UAR chr7 56082944
TCGA-74-6573 (SN154) ZNF713 chr7 55980418 UAR chr7 55945274