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Table 2 A selection of differentially expressed genetic clusters in the hfq and rsmA mutants

From: RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006

Genetic clusters hfq rsmA
RNA1 Protein1 RNA1 Protein1
Prodigiosin production
Carbapenem production
Type II secretion
Type IV pilus
Electron transport
Flagellar production
Prophage elements
  1. 1Differentially expressed genes were identified in the transcriptomic and proteomic datasets. Up and down arrows indicate increases and decreases in expression at the level of RNA or protein. Fold changes for individual genes in these clusters as well as genes in other pathways are listed in Additional file 1: Table S4. A complete list of all genes identified as differentially expressed are listed in Additional file 2: Table S5.