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Table 3 Differentially expressed genes in the pig and car clusters

From: RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006

Gene hfq RNA1 hfq Protein1 rsmA RNA1 rsmA Protein1 Description
Pig cluster
or1369 0.11 0.24 0.51 1.71 PigA;
or1370 0.21 - 0.43 1.96 PigB;
or1371 0.26 0.37 0.57 - PigC;
or1372 0.27 0.32 0.68 - PigD;
or1373 - 0.32 - - PigE;
or1374 - 0.41 - 1.55 PigF;
or1376 - - 0.67 - PigH;
Car cluster
or3484 0.06 - - - CarR;
or3483 0.03 0.18 0.30 0.51 CarA;
or3482 0.05 0.17 0.31 0.46 CarB;
or3481 0.01 0.18 0.21 0.47 CarC;
or3480 0.16 - 0.40 - CarD;
or3478 0.13 - 0.22 - CarF;
  1. 1Fold changes were calculated as the ratio of mutant to WT. Differentially expressed genes were identified with an FDR threshold of 10% for RNA levels of hfq and protein levels of rsmA. A 5% FDR threshold was used for RNA levels of rsmA. hfq protein levels were identified with a P value < 10%.