Skip to main content

Table 4 Statistics of P. bretschneideri DGE sequencing

From: Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd)

Summary

FS1

FS2

FS3

FS4

FS5

Total number of raw tags

5,942,273

5,765,350

5,930,561

6,154,708

6,144,427

Total number of distinct raw tags

275,061

279,671

273,457

278,272

284,436

Total number of clean tags

5,779,213

5,602,344

5,771,830

5,987,439

5,968,618

Total number of distinct clean tags

127,209

130,176

128,372

125,656

122,997

Clean tag/Raw tag

97.26%

96.40%

97.32%

97.28%

97.14%

Total number of tags mapping to genes

4,601,197

4,514,247

4,742,242

4,916,898

4,676,676

% of tags mapping to genes

79.62

80.58

82.18

82.12

78.35

Total number of distinct tags mapping to gene

73,993

76,128

77,039

74,448

68,916

% of distinct tags mapping to gene

58.17

58.48

60.01

59.25

56.03

Number of all tag-mapped genes

34,781

35,530

36,335

35,415

32,705

% of all tag-mapped genes

38.55

39.38

40.27

39.25

36.25

Number of unambiguous tags mapping to gene

3,875,820

3,766,999

3,956,567

4,137,841

3,856,928

% of unambiguous tags mapping to gene

67.06

67.24

68.55

69,11

64.62

Number of distinct unambiguous tags mapping to gene

61,872

63,617

64,242

61,873

56,894

% of distinct unambiguous tags mapping to gene

48.64

48.87

50.04

49.24

46.26

Number of unambiguous tag-mapped genes

26,836

27,541

28,175

27,331

24,975

% of unambiguous tag-mapped genes

29.74

30.52

31.23

30.29

27.68

Number of unknown tags

1,178,016

1,088,097

1,028,588

1,070,541

1,291,942

% of unknown tags

20.38

19.42

17.82

17.88

21.65

Number of distinct unknown tags

53,216

54,048

51,333

51,208

54,081

% of distinct unknown tags

41.83

41.52

39.99

40.75

43.97

  1. Notes: Statistics of raw tags, clean tags, tags mapped to unigenes, unambiguous tags and unknown tags. Abbreviations: DGE, digital gene expression; FS1, fruit stage 1; FS2, fruit stage 2; FS3, fruit stage 3; FS4, fruit stage 4; FS5, fruit stage 5.