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Table 4 Statistics of P. bretschneideri DGE sequencing

From: Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd)

Summary FS1 FS2 FS3 FS4 FS5
Total number of raw tags 5,942,273 5,765,350 5,930,561 6,154,708 6,144,427
Total number of distinct raw tags 275,061 279,671 273,457 278,272 284,436
Total number of clean tags 5,779,213 5,602,344 5,771,830 5,987,439 5,968,618
Total number of distinct clean tags 127,209 130,176 128,372 125,656 122,997
Clean tag/Raw tag 97.26% 96.40% 97.32% 97.28% 97.14%
Total number of tags mapping to genes 4,601,197 4,514,247 4,742,242 4,916,898 4,676,676
% of tags mapping to genes 79.62 80.58 82.18 82.12 78.35
Total number of distinct tags mapping to gene 73,993 76,128 77,039 74,448 68,916
% of distinct tags mapping to gene 58.17 58.48 60.01 59.25 56.03
Number of all tag-mapped genes 34,781 35,530 36,335 35,415 32,705
% of all tag-mapped genes 38.55 39.38 40.27 39.25 36.25
Number of unambiguous tags mapping to gene 3,875,820 3,766,999 3,956,567 4,137,841 3,856,928
% of unambiguous tags mapping to gene 67.06 67.24 68.55 69,11 64.62
Number of distinct unambiguous tags mapping to gene 61,872 63,617 64,242 61,873 56,894
% of distinct unambiguous tags mapping to gene 48.64 48.87 50.04 49.24 46.26
Number of unambiguous tag-mapped genes 26,836 27,541 28,175 27,331 24,975
% of unambiguous tag-mapped genes 29.74 30.52 31.23 30.29 27.68
Number of unknown tags 1,178,016 1,088,097 1,028,588 1,070,541 1,291,942
% of unknown tags 20.38 19.42 17.82 17.88 21.65
Number of distinct unknown tags 53,216 54,048 51,333 51,208 54,081
% of distinct unknown tags 41.83 41.52 39.99 40.75 43.97
  1. Notes: Statistics of raw tags, clean tags, tags mapped to unigenes, unambiguous tags and unknown tags. Abbreviations: DGE, digital gene expression; FS1, fruit stage 1; FS2, fruit stage 2; FS3, fruit stage 3; FS4, fruit stage 4; FS5, fruit stage 5.