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Table 2 DMPs by cluster membership

From: MMDiff: quantitative testing for shape changes in ChIP-Seq data sets

Cluster

1

2

3

4

5

6

7

8

9

10

N P

362

275

264

352

363

250

84

176

128

232

N Δ

9

2

7

18

24

14

4

4

12

40

p-value

ooo

ooo

ooo

ooo

ooo

ooo

 

ooo

  

Pol II log2 FC

0.04

0.03

-0.03

-0.07

-0.01

-0.05

-0.19

-0.08

-0.22

-0.13

Cluster

11

12

13

14

15

16

17

18

  

N P

226

291

228

209

241

167

145

155

  

N Δ

24

67

23

78

54

61

28

70

  

p-value

 

***

 

***

***

***

 

***

  

Pol II log2 FC

-0.13

-0.16

-0.11

-0.23

-0.18

-0.23

-0.23

-0.30

  
  1. N P : number of promoters associated with the given cluster in WT, N Δ : number of DMPs called by MMDiff, p-values: significance of enrichment/depletion with DMPs by cluster. (***,ooo corresponds to p-values ≤0.001, where two-sided binomial tests are computed for each cluster. ooo Clusters contain fewer, *** clusters contain more DMPs than expected by chance. Pol II log2 FC: log2 fold change in Pol II binding averaged over all promoters per cluster.)