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Table 3 Candidate loci under positive selection that were common among the pairwise comparisons between cultivated landraces and the different market classes of contemporary varieties

From: SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato

Marker Chrom. Exon/intron Gene name* Description* Expected heterozigosity-Fst
      vs processing vs fresh market vs cherry
SL10450_71 3 Exon Solyc03g114120.2 Ribonuclease III 0.72–0.70 0.14–0.13 0.57–0.24
SL10019_376 3 Intron Solyc03g113990.2 Uncharacterized conserved protein 0.67–0.66 0.18–0.13 0.56–0.20
SL20017_699 5 Intron Solyc05g050900.2 Spindle and kinetochore-associated protein 1 homolog 0.53–0.50 0.47–0.44 0.52–0.29
SGN-U313292_417 11 Exon Solyc11g072190.1 Elongation factor beta-1 0.29–0.29 0.29–0.29 0.40–0.39
SGN-U312814_254 11 Exon Solyc11g069430.1 Aquaporin 1 0.55–0.40 0.54–0.32 0.62–0.49
  1. *Gene name and description were retrieved from the Solgenomics network (http://solgenomics.net/organism/Solanum_lycopersicum/genome).