SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato

BMC Genomics

Table 3 Candidate loci under positive selection that were common among the pairwise comparisons between cultivated landraces and the different market classes of contemporary varieties

Marker	Chrom.	Exon/intron	Gene name*	Description*	Expected heterozigosity-Fst
					vs processing	vs fresh market	vs cherry
SL10450_71	3	Exon	Solyc03g114120.2	Ribonuclease III	0.72–0.70	0.14–0.13	0.57–0.24
SL10019_376	3	Intron	Solyc03g113990.2	Uncharacterized conserved protein	0.67–0.66	0.18–0.13	0.56–0.20
SL20017_699	5	Intron	Solyc05g050900.2	Spindle and kinetochore-associated protein 1 homolog	0.53–0.50	0.47–0.44	0.52–0.29
SGN-U313292_417	11	Exon	Solyc11g072190.1	Elongation factor beta-1	0.29–0.29	0.29–0.29	0.40–0.39
SGN-U312814_254	11	Exon	Solyc11g069430.1	Aquaporin 1	0.55–0.40	0.54–0.32	0.62–0.49

*Gene name and description were retrieved from the Solgenomics network (http://solgenomics.net/organism/Solanum_lycopersicum/genome).

ISSN: 1471-2164