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Figure 3 | BMC Genomics

Figure 3

From: Phylogenetic and transcriptional analysis of an expanded bZIP transcription factor family in Phytophthora sojae

Figure 3

Phylogenetic tree of P. sojae bZIP full length proteins. The maximum-likelihood trees were constructed based on the full-length protein sequences; bootstrap values above 50 are shown near the tree nodes. The black dotted line divides the candidates into group 1 and group 2. Different bZIP classes are marked by the corresponding labels. Column “Homolog clusters” shows 11 homolog clusters that were grouped by all vs. all blastp searches with e-value of 1e-50 as the threshold. In the column “Duplicated genes”, “*” indicates inferred tandem duplications, “**” indicates duplications between scaffolds or two loci with >20 kb distance within scaffolds, and “?” refers to bZIPs just within 20 kb of a scaffold. In the column “Recent duplication”, five gene clusters are indicated in which the duplications were inferred to occur subsequent to the radiation of P. sojae, according to Additional file 5: Figure S4.

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