Table 1 Number of reads sequenced and mapped to the tomato genome

Raw bases (bp)

12,814,237,438

14,141,031,018

26,955,268,456

Raw reads

126,873,638

140,109,218

266,982,856

Clean bases (bp)

9,936,610,838

11,016,491,741

20,953,102,579

Clear reads

100455991

111323699

211779690

Total alignment ^* (percent of clean reads)

82394883 82.02%

91194594 81.92%

173589477 81.97%

Unique matches (percent of clean reads)

36742770 36.58%

40622954 36.49%

77365724 36.53%

Multi-position match (percent of clean reads)

45652113 45.44%

50571640 45.43%

96223753 45.44%

Unmatched (percent of clean reads)

18061108 17.98%

20129105 18.08%

38190213 18.03%