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Table 2 Statistics of DGE sequencing

From: Analysis of sea-island cotton and upland cotton in response to Verticillium dahliaeinfection by RNA sequencing

Total reads

12230124(100%)

11875055(100%)

11764630(100%)

12511454(100%)

12167879(100%)

12420918(100%)

Total mapped reads

9770169(79.89 %)

9493222(79.94 %)

9411269(80 %)

9969428(79.68 %)

9867697(81.1 %)

10150382(81.72 %)

Perfect match

6659597(54.45 %)

6469378(54.48 %)

6478583(55.07 %)

6778488(54.18 %)

6721125(55.24 %)

6954849(55.99 %)

<=2 bp mismatch

3110572(25.43 %)

3023844(25.46 %)

2932686(24.93 %)

3190940(25.5 %)

3146572(25.86 %)

3195533(25.73 %)

Unique match

6853979(56.04 %)

6623521(55.78 %)

6692373(56.89 %)

7004728(55.99 %)

7165038(58.88 %)

7483020(60.25 %)

Multi-position match

2916190(23.84 %)

2869701(24.17 %)

2718896(23.11 %)

2964700(23.7 %)

2702659(22.21 %)

2667362(21.47 %)

Total unmapped reads

2459955(20.11 %)

2381833(20.06 %)

2353361(20 %)

2542026(20.32 %)

2300182(18.9 %)

2270536(18.28 %)

  1. Note: 1: KV1/D; 2: XH/D; 3: ZKV1/V; 4:XH/V; 5:KV1/U; and 6: XH/U.