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Table 1 The most abundant transcripts in fruit (Cluster A) and AZ (Cluster B) at the last stage of olive ripening

From: Comparative transcriptional profiling analysis of olive ripe-fruit pericarp and abscission zone tissues shows expression differences and distinct patterns of transcriptional regulation

Unigene ID

UniProt ID

Fruit

AZ

p-value

Description

Cluster A

Cluster A1

Enriched in fruit

OL006944

Q2TUW1

20742.30

1196.08

0.00E + 00

Abscisic stress ripening-like protein = Glycine max

OL007219

Q8GVD0

5033.88

214.76

0.00E + 00

Beta-glucosidase, Bglc = Olea europaea subsp. europaea

OL001156

B9H1F2

5022.65

95.79

0.00E + 00

Uncharacterized protein = Populus trichocarpa

OL006467

E0CU96

2920.45

169.91

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL001418

B9R8J3

8902.90

1040.58

0.00E + 00

Phosphoprotein ECPP44 = Ricinus communis

OL007236

Q8H159

4247.26

1430.34

0.00E + 00

Polyubiquitin 10 [Cleaved into: Ubiquitin], UBQ10, At4g05320

OL003644

C6KMJ4

4794.95

1423.76

0.00E + 00

ACC oxidase, ACO1 = Boea hygrometrica

OL006886

Q0WLP3

5085.83

870.26

0.00E + 00

Uncharacterized protein = Arabidopsis thaliana

OL006727

P29512

1812.59

180.74

0.00E + 00

Tubulin beta-2/beta-3 chain, TUBB2 TUB2, At5g62690; TUBB3 TUB3, At5g62700

OL006856

Q06R56

1174.95

18.56

0.00E + 00

Acetyl-CoA carboxylase beta subunit accD, FEC0159 = Forsythia europaea

OL006553

O04111

1437.34

5.97

0.00E + 00

Chalcone synthase, CHS, Perilla frutescens

OL002387

B9S382

949.24

22.02

0.00E + 00

Tubulin beta chain = Ricinus communis

OL000027

A2IBF9

1329.71

22.64

0.00E + 00

Flavanone-3-hydroxylase = Gossypium hirsutum

OL002907

B9SLE5

3731.27

15.50

0.00E + 00

Peptidase = Ricinus communis

OL000014

A1E4D3

610.81

13.51

0.00E + 00

Ethylene receptor, ETR1 = Coffea canephora

OL003708

D5LY28

609.68

3.53

0.00E + 00

Soluble acid invertase 1, SAI1 = Orobanche ramosa

OL001944

B9RP00

1995.12

42.28

9.70E-301

Uncharacterized protein = Ricinus communis

OL007516

Q9LLB7

4587.02

1203.54

5.39E-270

Thaumatin-like protein = Vitis vinifera

OL001075

B7U8J4

1418.63

52.49

1.22E-244

Expansin, CDK3 = Diospyros kaki

OL005738

D7U0E8

538.58

14.77

2.73E-233

Uncharacterized protein = Vitis vinifera

OL007398

Q9AXU0

1854.70

19.23

5.46E-226

Major latex-like protein = Prunus persica

OL000584

A5BN70

585.33

8.71

2.72E-204

Uncharacterized protein = Vitis vinifera

OL006621

O49877

1057.22

162.37

2.53E-201

CYP1 (Cysteine protease TDI-65)

OL004008

D7SNI5

615.01

5.64

2.08E-200

Uncharacterized protein = Vitis vinifera

OL007235

Q8H145

432.58

14.77

5.11E-200

Putative elongation factor (Fragment), At1g56075

Cluster A2

Fruit genes

OL003887

D7SKG3

9684.90

0.00

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL004525

D7T2N4

5878.45

0.00

0.00E + 00

6,7-dimethyl-8-ribityllumazine synthase = Vitis vinifera

OL000028

A2ICC9

2823.47

0.00

0.00E + 00

Anthocyanidin synthase, ANS = Vitis vinifera

OL006333

E0CQN9

1291.93

0.00

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL002413

B9S4E4

2111.11

0.00

0.00E + 00

Alpha-expansin 8 = Ricinus communis

OL004078

D7SQ46

928.57

0.00

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL002282

B9S053

1262.49

0.00

0.00E + 00

ATP synthase alpha subunit mitochondrial = Ricinus communis

OL003892

D7SKJ8

1091.87

0.00

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL004267

D7SVD2

1810.56

0.00

5.65E-279

Uncharacterized protein = Vitis vinifera

OL006945

Q2UYU6

619.52

0.00

3.12E-265

Flavonoid-3′-hydroxylase = Vitis vinifera

OL003801

D7SI22

693.27

0.00

7.63E-263

Uncharacterized protein = Vitis vinifera

OL005180

D7TJ49

903.07

0.00

2.23E-255

Uncharacterized protein = Vitis vinifera

OL007481

Q9FXL4

642.40

0.00

8.53E-252

Elicitor inducible beta-1,3-glucanase, NtEIG-E76 = Nicotiana tabacum

OL004529

D7T2X5

1244.84

0.00

2.22E-235

Uncharacterized protein = Vitis vinifera

OL004452

D7T0N0

444.07

0.00

1.16E-219

Uncharacterized protein = Vitis vinifera

OL001743

B9RI89

699.45

0.00

1.76E-215

Serine-threonine protein kinase = Ricinus communis

OL007506

Q9LIC2

398.86

0.00

3.50E-215

Multispanning membrane protein-like, At3g13772

OL005327

D7TN33

2085.55

0.00

7.29E-198

Uncharacterized protein = Vitis vinifera

OL004599

D7T4I1

790.51

0.00

5.34E-191

Uncharacterized protein = Vitis vinifera

OL007004

Q40168

880.38

0.00

1.21E-182

Floral homeotic protein AGAMOUS, TAG1 = Solanum lycopersicum

OL001261

B9I6M7

505.91

0.00

2.94E-181

Uncharacterized protein = Populus trichocarpa

OL007205

Q84V57

368.45

0.00

1.16E-180

Pectinesterase = Nicotiana benthamiana

OL006690

P14721

454.41

0.00

4.27E-171

Dihydroflavonol-4-reductase, DFRA = Antirrhinum majus

OL006603

O24329

532.05

0.00

2.50E-163

Putative uncharacterized protein = Ricinus communis

OL007050

Q45QI7

831.88

0.00

3.09E-161

Chalcone-flavonone isomerase, CHI = Camellia sinensis

Cluster B

Cluster B1

Enriched in AZ

OL007063

Q53U35

466.67

39974.19

0.00E + 00

Similar to pathogenesis-related protein, STH-2 = Solanum lycopersicum

OL004910

D7TBW7

92.31

12814.10

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL000784

A5C4X8

19.48

1499.53

0.00E + 00

Uncharacterized protein = Vitis vinifera

OL005534

D7TTS3

9.40

677.78

7.69E-234

Uncharacterized protein = Vitis vinifera

OL001130

B9GQM0

24.67

528.28

1.89E-222

Glycosyltransferase, CAZy family GT8 = Populus trichocarpa

OL001048

B3Y023

6.44

337.01

1.24E-210

Arginine decarboxylase, PpADC, Prunus persica

OL001934

B9RNU7

144.97

1060.02

1.01E-205

Protein phosphatase 2c = Ricinus communis

OL007508

Q9LJU7

141.11

842.87

6.39E-178

Purple acid phosphatase 18, PAP18 PAP30, At3g20500

OL000621

A5BSF5

14.55

385.83

8.80E-161

Uncharacterized protein = Vitis vinifera

OL004617

D7T4X3

86.61

712.16

3.01E-154

Uncharacterized protein = Vitis vinifera

OL000020

A1X877

6.01

209.08

1.26E-152

NRC1 = Solanum lycopersicum

OL002350

B9S255

11.95

656.04

2.81E-144

Uncharacterized protein = Ricinus communis

OL002844

B9SJN1

4.75

235.99

1.57E-143

Transcription factor hy5 = Ricinus communis

OL000814

A5C762

3.65

376.25

2.47E-126

Uncharacterized protein = Vitis vinifera

OL003935

D7SLN3

4.44

211.35

3.03E-122

Uncharacterized protein = Vitis vinifera

OL003232

B9SWQ3

15.25

265.80

2.37E-119

Serine/threonine protein kinase = Ricinus communis

OL000971

A9PCV7

6.58

498.02

7,68E-114

Uncharacterized protein = Populus trichocarpa

OL004147

D7SS09

8.28

365.56

8,33E-113

Uncharacterized protein = Vitis vinifera

OL003339

B9T0K9

6.41

353.47

1.06E-112

Plasminogen activator inhibitor 1 RNA-binding protein, putative = Ricinus communis

OL007507

Q9LJI5

50.33

494.78

6.20E-107

V-type proton ATPase subunit d1, VHA-D1, At3g28710

OL000585

A5BN72

2.24

113.57

6.46E-103

Uncharacterized protein = Vitis vinifera

OL001014

B1PK08

114.23

616.10

3.23E-100

Putative polygalacturonase = Olea europaea

OL007154

Q6RYA0

51.28

584.61

1,32E-98

Salicylic acid-binding protein 2 = Nicotiana tabacum

OL003709

D5M8I6

22.52

216.21

3.46E-98

Uncharacterized protein = Vitis vinifera

OL000614

A5BR22

108.46

1156.08

1.18E-92

Uncharacterized protein = Vitis vinifera

Cluster B2

AZ genes

OL007111

Q68V46

0.00

1349.85

0.00E + 00

Beta-1,3-glucanase, glu-4 = Olea europaea

OL001027

B2M153

0.00

517.74

4.51E-277

Putative laccase = Rosa hybrid cultivar

OL002714

B9SF95

0.00

614.34

7.75E-267

Nitrate transporter = Ricinus communis

OL006675

O98664

0.00

576.60

5.46E-253

Ribulose bisphosphate carboxylase large chain, rbcL = Kigelia africana

OL007711

Q9XEL8

0.00

396.80

8.65E-224

3-hydroxy-3-methylglutaryl-coenzyme A reductase 2, HMGR2 = Capsicum annuum

OL000602

A5BPW9

0.00

602.46

2.97E-213

Uncharacterized protein = Vitis vinifera

OL001338

B9NAX4

0.00

3264.55

3.51E-192

Uncharacterized protein = Populus trichocarpa

OL000148

A5AN11

0.00

396.34

1.06E-168

Uncharacterized protein = Vitis vinifera

OL004086

D7SQA7

0.00

273.23

1.06E-168

Uncharacterized protein = Vitis vinifera

OL003142

B9STR3

0.00

277.60

5.43E-166

Endosomal P24A protein = Ricinus communis

OL002860

B9SK95

0.00

489.81

8.68E-165

12-oxophytodienoate reductase opr = Ricinus communis

OL005126

D7THY5

0.00

222.22

1.74E-164

Uncharacterized protein = Vitis vinifera

OL007151

Q6RH27

0.00

570.32

1.42E-160

NAC domain protein, SlNAC1 = Solanum lycopersicum

OL004686

D7T6Y2

0.00

305.72

6.41E-145

Uncharacterized protein = Vitis vinifera

OL007397

Q9AXR6

0.00

248.90

1.31E-141

ATP:citrate lyase = Capsicum annuum

OL000367

A5B7F7

0.00

319.83

2.10E-140

Uncharacterized protein = Vitis vinifera

OL002951

B9SML0

0.00

214.99

6.88E-136

Lyase = Ricinus communis

OL007180

Q7XE16

0.00

176.98

8.81E-134

Cell division cycle protein 48 = Oryza sativa subsp. japonica

OL005047

D7TFE6

0.00

357.56

1.76E-133

Uncharacterized protein = Vitis vinifera

OL000444

A5BDC8

0.00

382.41

5.77E-129

Uncharacterized protein = Vitis vinifera

OL002899

B9SL31

0.00

245.52

2.31E-128

Transcription factor = Ricinus communis

OL003084

B9SRT5

0.00

96.17

1.89E-124

Phospholipid-transporting atpase = Ricinus communis

OL007255

Q8LAH7

0.00

341.40

4.96E-119

12-oxophytodienoate reductase 1, AtOPR1, At1g76680

OL001800

B9RJM7

0.00

394.51

1.27E-116

Uncharacterized protein = Ricinus communis

OL002929

B9SM03

0.00

296.74

2.54E-116

Uncharacterized protein = Ricinus communis

  1. The sequences were selected at p < 0.01 and were sorted by p-value. The table shows the total read count in RPKMx1000 for each gene after normalization across the 2 samples: (a) Fruit at 217 DPA, (b) AZ at 217 DPA.