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Table 2 List of olive transcripts from KEGG pathway maps with EC numbers, Unigene ID numbers, UniProt ID numbers, normalized expression values and annotated gene description

From: Comparative transcriptional profiling analysis of olive ripe-fruit pericarp and abscission zone tissues shows expression differences and distinct patterns of transcriptional regulation

KEGG PATHWAY

EC

Unigene ID

UniProt ID

Fruit

AZ

p-value

Description

STARCH AND SUCROSE METABOLISM

Cluster A

Cluster A1

Enriched in fruit

      
 

3.2.1.26

OL003708

D5LY28

610

4

0.00E + 00

Beta-fructofuranosidase

 

2.4.1.13

OL000884

A7IZK5

244

85

1.61E-36

Sucrose synthase

 

3.2.1.39

OL002642

B9SCU1

111

94

5.10E-22

Glucan endo-1,3-beta-D-glucosidase

Cluster A2

Fruit genes

      
 

2.4.1.1

OL002542

B9S939

250

0

3.20E-96

1,4-alpha-glucan phosphorylase

 

2.4.1.12

OL002104

B9RUD8

5

0

3.91E-03

Cellulose synthase

 

2.7.7.27

OL000035

A3KCF8

10

0

6.10E-05

Glucose-1-phosphate adenylyltransferase

 

2.7.7.9

OL002654

B9SD97

5

0

1.95E-03

UDP glucose pyrophosphorylase

 

3.1.1.11

OL001166

B9H3W4

10

0

3.91E-03

Pectin methylesterase

 

5.1.3.6

OL007529

Q9LPC1

8

0

9.77E-04

UDP-glucuronate 4-epimerase

 

5.3.1.9

OL003650

C6TGC6

6

0

1.95E-03

Glucose-6-phosphate isomerase

Cluster B

Cluster B1

Enriched in AZ

      
 

3.2.1.2

OL006254

E0AE02

18

32

1.82E-03

Beta-amylase

 

4.1.1.35

OL001047

B3VDY9

102

168

2.19E-06

UDP-glucuronate decarboxylase

 

2.4.1.21

OL001761

B9RIR1

5

28

3.24E-08

ADP-glucose synthase

Cluster B2

AZ genes

      
 

3.2.1.4

OL007034

Q43149

0

20

9.31E-10

Cellulase

 

2.7.1.4

OL006635

O65583

0

9

2.44E-04

Fructokinase

 

3.1.3.12

OL002988

B9SNT9

0

4

1.95E-03

Trehalose 6-phosphate phosphatase

 

3.2.1.1

OL007022

Q42678

0

17

2.38E-07

Alpha-amylase

 

3.2.1.15

OL000895

A7PZL3

0

10

3.05E-05

Polygalacturonase

 

3.2.1.20

OL007491

Q9LEC9

0

12

2.91E-11

Alpha-glucosidase

CYSTEINE AND METHIONINE METABOLISM

Cluster A

Cluster A1

Enriched in fruit

      
 

2.6.1.1

OL001190

B9HAW0

35

8

3.18E-06

Aspartate transaminase

 

2.7.1.100

OL002217

B9RY82

64

24

1.36E-05

S-methyl-5-thioribose kinase

Cluster A2

Fruit genes

      
 

2.1.1.14

OL002466

B9S6C1

81

0

1.29E-26

5methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase

 

2.1.1.37

OL001007

B0FPD7

6

0

1.95E-03

DNA (cytosine-5-)-methyltransferase

 

2.5.1.47

OL002734

B9SFU8

52

0

4.34E-19

Cysteine synthase

 

2.5.1.6

OL007215

Q8GTL5

10

0

2.44E-04

Methionine adenosyltransferase

Cluster B

Cluster B1

Enriched in AZ

      
 

2.5.1.48

OL002235

B9RYU1

3

23

1.94E-06

Cystathionine gamma-synthase

 

2.8.1.2

OL001730

B9RHZ9

7

57

2.12E-13

3-mercaptopyruvate sulfurtransferase

 

3.1.3.77

OL006405

E0CSI1

5

17

5.08E-04

Acireductone synthase

 

3.3.1.1

OL006738

P35007

239

308

2.02E-06

Adenosylhomocysteinase

 

5.3.1.23

OL002002

B9RR88

12

74

7.52E-15

S-methyl-5-thioribose-1-phosphate isomerase

Cluster B2

AZ genes

      
 

1.1.1.27

OL007383

Q96569

0

191

9.54E-07

L-lactate dehydrogenase

 

1.14.17.4

OL006733

P31237

0

67

1.36E-20

ACC oxidase

 

2.3.1.30

OL006733

B9S9Q4

0

27

1.16E-10

Serine O-acetyltransferase

 

2.5.1.16

OL003685

D2K8S6

0

52

5.55E-17

Spermidine synthase

 

4.1.1.50

OL000082

A5AFT0

0

133

2.80E-45

Adenosylmethionine decarboxylase

 

2.7.2.4

OL005688

D7TYU1

0

5

7.81E-03

Aspartate kinase

AMINO SUGAR AND NUCLEOTIDE SUGAR METABOLISM

Cluster A

Cluster A1

Enriched in fruit

      
 

5.3.1.8

OL001163

B9H303

77

5

1.21E-21

Mannose-6-phosphate isomerase

 

5.3.1.9

OL001141

B9GV29

16

4

7.53E-04

Glucose-6-phosphate isomerase

Cluster A2

Fruit genes

      
 

1.1.1.271

OL002645

B9SCY0

17

0

3.05E-05

GDP-L-fucose synthase

 

2.7.1.4

OL004560

D7T3P0

12

0

6.10E-05

Fructokinase

 

2.7.7.27

OL001390

B9R7X6

7

0

9.77E-04

Glucose-1-phosphate adenylyltransferase

 

2.7.7.64

OL007403

Q9C5I1

11

0

1.91E-06

UTP-monosaccharide-1-phosphate uridylyltransferase

 

2.7.7.9

OL002654

B9SD97

5

0

1.95E-03

UTP-glucose-1-phosphate uridylyltransferase

 

5.1.3.6

OL007529

Q9LPC1

8

0

9.77E-04

UDP-glucuronate 4-epimerase

Cluster B

Cluster B1

Enriched in AZ

      
 

3.2.1.14

OL007471

Q9FS45

10

134

5.46E-30

Chitinase

 

4.1.1.35

OL001047

B3VDY9

102

168

2.19E-06

UDP-glucuronate decarboxylase

Cluster B2

AZ genes

      
 

3.2.1.55

OL002630

B9SCF3

0

6

2.44E-04

Alpha-N-arabinofuranosidase

 

5.1.3.12

OL002629

B9SQF3

0

6

3.91E-03

UDP-glucuronate 5”-epimerase

 

5.4.2.8

OL003424

B9T3D2

0

5

9.77E-04

Phosphomannomutase

  1. The table shows the total read count in RPKMx1000 for each gene after normalization across the 2 samples: (a) Fruit at 217 DPA, (b) AZ at 217 DPA. We selected the sequences at p < 0.01.