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Table 1 Sampling, trimming and pre-assembly screening, library statistics

From: The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus

Sequencing library E1 E2 L2 M T1 T2 total
lifecycle stage adult female adult female L2 larvae adult male adult female adult female  
source population Europe Rhine Europe Poland Europe Rhine Asia cultured Asia cultured Asia wild  
geolocation 49.0262N; 53.751959N; 49.0262N; 22.6418N; 22.6418N; 22.5074N;  
  8.310556E 21.730957E 8.310556E 120.4440E 120.4440E 120.4220E  
raw reads 209325 111746 112718 106726 99482 116366 756363
low quality reads 92744 10903 15653 15484 7947 27683 170414
A. crassus rRNA reads 76403 11213 30654 31351 24929 7233 181783
eel-host mRNA reads 4835 3613 1220 1187 7475 11741 30071
eel-host rRNA reads 13112 69 1603 418 514 38 15754
Cercozoa reads (rRNA) 0 0 5286 0 0 0 5286
valid reads 22231 85948 58302 58286 58617 69671 353055
span of valid reads (in bases) 7167338 24046225 16661548 17424408 14443123 20749177 100491819
reads mapping (uniquely) 12023 65398 39690 36782 42529 55966 252388
reads mapping to 8359 61073 12917 31673 37306 50445 201773
A. crassus contigs        
reads mapping highCA 5883 48009 8475 18998 28970 41963 152298
contigs        
reads mapping to contigs 3595 34115 1602 10543 21413 22909 94177
with count > 32