The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus

BMC Genomics

Table 1 Sampling, trimming and pre-assembly screening, library statistics

Sequencing library	E1	E2	L2	M	T1	T2	total
lifecycle stage	adult female	adult female	L2 larvae	adult male	adult female	adult female
source population	Europe Rhine	Europe Poland	Europe Rhine	Asia cultured	Asia cultured	Asia wild
geolocation	49.0262N;	53.751959N;	49.0262N;	22.6418N;	22.6418N;	22.5074N;
	8.310556E	21.730957E	8.310556E	120.4440E	120.4440E	120.4220E
raw reads	209325	111746	112718	106726	99482	116366	756363
low quality reads	92744	10903	15653	15484	7947	27683	170414
A. crassus rRNA reads	76403	11213	30654	31351	24929	7233	181783
eel-host mRNA reads	4835	3613	1220	1187	7475	11741	30071
eel-host rRNA reads	13112	69	1603	418	514	38	15754
Cercozoa reads (rRNA)	0	0	5286	0	0	0	5286
valid reads	22231	85948	58302	58286	58617	69671	353055
span of valid reads (in bases)	7167338	24046225	16661548	17424408	14443123	20749177	100491819
reads mapping (uniquely)	12023	65398	39690	36782	42529	55966	252388
reads mapping to	8359	61073	12917	31673	37306	50445	201773
A. crassus contigs
reads mapping highCA	5883	48009	8475	18998	28970	41963	152298
contigs
reads mapping to contigs	3595	34115	1602	10543	21413	22909	94177
with count > 32

ISSN: 1471-2164