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Table 4 Overrepresentation of GO terms in positively selected A. crassus TUGs

From: The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus

Category

GO.ID

Term

Number annotated

Number dn/ds > 0.5

Expected

p.value

molecular function

GO:0008233

peptidase activity

43

13

6.08

0.0034

 

GO:0015179

L-amino acid transmembrane transporter activity

2

2

0.28

0.0198

 

GO:0043021

ribonucleoprotein complex binding

6

3

0.85

0.0396

 

GO:0070011

peptidase activity, acting on L-amino acid peptides

35

9

4.95

0.0442

 

GO:0004175

endopeptidase activity

25

7

3.54

0.0488

biological process

GO:0042594

response to starvation

15

7

2.13

0.0022

 

GO:0009083

branched chain family amino acid catabolic process

3

3

0.43

0.0027

 

GO:0006914

autophagy

12

6

1.70

0.0031

 

GO:0009063

cellular amino acid catabolic process

10

5

1.42

0.0071

 

GO:0009267

cellular response to starvation

7

4

0.99

0.0093

 

GO:0006520

cellular amino acid metabolic process

44

12

6.24

0.0128

 

GO:0006915

apoptotic process

78

18

11.06

0.0147

 

GO:0009308

amine metabolic process

57

14

8.08

0.0189

 

GO:0005997

xylulose metabolic process

2

2

0.28

0.0199

 

GO:0006739

NADP metabolic process

2

2

0.28

0.0199

 

GO:0007616

long-term memory

2

2

0.28

0.0199

 

GO:0009744

response to sucrose stimulus

2

2

0.28

0.0199

 

GO:0010172

embryonic body morphogenesis

2

2

0.28

0.0199

 

GO:0015807

L-amino acid transport

2

2

0.28

0.0199

 

GO:0050885

neuromuscular process controlling balance

2

2

0.28

0.0199

 

GO:0007281

germ cell development

17

6

2.41

0.0226

 

GO:0090068

positive regulation of cell cycle process

17

6

2.41

0.0226

 

GO:0042981

regulation of apoptotic process

64

15

9.07

0.0232

 

GO:0051329

interphase of mitotic cell cycle

23

7

3.26

0.0320

 

GO:0044106

cellular amine metabolic process

55

13

7.80

0.0325

 

GO:0031571

mitotic cell cycle G1/S transition DNA damage checkpoint

14

5

1.98

0.0355

 

GO:0010564

regulation of cell cycle process

34

9

4.82

0.0377

 

GO:0006401

RNA catabolic process

6

3

0.85

0.0398

 

GO:0010638

positive regulation of organelle organization

6

3

0.85

0.0398

 

GO:0009056

catabolic process

149

28

21.12

0.0398

 

GO:0008219

cell death

93

19

13.18

0.0441

 

GO:0007154

cell communication

144

27

20.41

0.0455

 

GO:0051726

regulation of cell cycle

52

12

7.37

0.0474

 

GO:0030330

DNA damage response, signal transduction by p53 class mediator

15

5

2.13

0.0475

 

GO:0033238

regulation of cellular amine metabolic process

15

5

2.13

0.0475

cellular compartment

GO:0030532

small nuclear ribonucleoprotein complex

7

4

0.99

0.0093

 

GO:0005739

mitochondrion

137

28

19.38

0.0113

 

GO:0005682

U5 snRNP

2

2

0.28

0.0198

 

GO:0015030

Cajal body

2

2

0.28

0.0198

 

GO:0046540

U4/U6 x U5 tri-snRNP complex

2

2

0.28

0.0198

 

GO:0016607

nuclear speck

6

3

0.85

0.0396

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BMC Genomics

ISSN: 1471-2164

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