Skip to main content

Table 4 Overrepresentation of GO terms in positively selected A. crassus TUGs

From: The transcriptome of the invasive eel swimbladder nematode parasite Anguillicola crassus

Category GO.ID Term Number annotated Number dn/ds > 0.5 Expected p.value
molecular function GO:0008233 peptidase activity 43 13 6.08 0.0034
  GO:0015179 L-amino acid transmembrane transporter activity 2 2 0.28 0.0198
  GO:0043021 ribonucleoprotein complex binding 6 3 0.85 0.0396
  GO:0070011 peptidase activity, acting on L-amino acid peptides 35 9 4.95 0.0442
  GO:0004175 endopeptidase activity 25 7 3.54 0.0488
biological process GO:0042594 response to starvation 15 7 2.13 0.0022
  GO:0009083 branched chain family amino acid catabolic process 3 3 0.43 0.0027
  GO:0006914 autophagy 12 6 1.70 0.0031
  GO:0009063 cellular amino acid catabolic process 10 5 1.42 0.0071
  GO:0009267 cellular response to starvation 7 4 0.99 0.0093
  GO:0006520 cellular amino acid metabolic process 44 12 6.24 0.0128
  GO:0006915 apoptotic process 78 18 11.06 0.0147
  GO:0009308 amine metabolic process 57 14 8.08 0.0189
  GO:0005997 xylulose metabolic process 2 2 0.28 0.0199
  GO:0006739 NADP metabolic process 2 2 0.28 0.0199
  GO:0007616 long-term memory 2 2 0.28 0.0199
  GO:0009744 response to sucrose stimulus 2 2 0.28 0.0199
  GO:0010172 embryonic body morphogenesis 2 2 0.28 0.0199
  GO:0015807 L-amino acid transport 2 2 0.28 0.0199
  GO:0050885 neuromuscular process controlling balance 2 2 0.28 0.0199
  GO:0007281 germ cell development 17 6 2.41 0.0226
  GO:0090068 positive regulation of cell cycle process 17 6 2.41 0.0226
  GO:0042981 regulation of apoptotic process 64 15 9.07 0.0232
  GO:0051329 interphase of mitotic cell cycle 23 7 3.26 0.0320
  GO:0044106 cellular amine metabolic process 55 13 7.80 0.0325
  GO:0031571 mitotic cell cycle G1/S transition DNA damage checkpoint 14 5 1.98 0.0355
  GO:0010564 regulation of cell cycle process 34 9 4.82 0.0377
  GO:0006401 RNA catabolic process 6 3 0.85 0.0398
  GO:0010638 positive regulation of organelle organization 6 3 0.85 0.0398
  GO:0009056 catabolic process 149 28 21.12 0.0398
  GO:0008219 cell death 93 19 13.18 0.0441
  GO:0007154 cell communication 144 27 20.41 0.0455
  GO:0051726 regulation of cell cycle 52 12 7.37 0.0474
  GO:0030330 DNA damage response, signal transduction by p53 class mediator 15 5 2.13 0.0475
  GO:0033238 regulation of cellular amine metabolic process 15 5 2.13 0.0475
cellular compartment GO:0030532 small nuclear ribonucleoprotein complex 7 4 0.99 0.0093
  GO:0005739 mitochondrion 137 28 19.38 0.0113
  GO:0005682 U5 snRNP 2 2 0.28 0.0198
  GO:0015030 Cajal body 2 2 0.28 0.0198
  GO:0046540 U4/U6 x U5 tri-snRNP complex 2 2 0.28 0.0198
  GO:0016607 nuclear speck 6 3 0.85 0.0396