Skip to main content

Table 3 The top five annotated genes for each comparison

From: Whole transcriptome characterization of the effects of dehydration and rehydration on Cladonia rangiferina, the grey reindeer lichen

Wetting sample groups vs. wet

Annotation

Up W15m vs. wet

Down W15m vs. wet

Up W30m vs. wet

Down W30m vs. wet

Up W1h vs. wet

Down W1h vs. wet

Short-chain dehydrogenase, putative, F

Aspartic-type endopeptidase, putative, F

Short-chain dehydrogenase, putative, F

Nitrite reductase, F

CaaX farnesyltransferase alpha subunit, F

Nitrite reductase, F

Mitochondrial molecular chaperone, F

Enoyl-acyl-carrier-proteinreductase 1, F

CaaX farnesyltransferase alpha subunit, F

30 kDa heat shock protein, F

Beta-glucosidase, putative, F

30 kDa heat shock protein, F

Alcohol dehydrogenase, F

NEDD8 conjugating enzyme, F

Mitochondrial molecular chaperone, F

Ion channel, F

Non-classical export protein Nce102, putative, F

Siroheme synthase, putative, F

PaaI thioesterase family protein, putative, F

DNA-directed RNA polymerase II subunit, F

Beta-glucosidase, putative, F

Hsp98/Hsp104/ClpA, putative, F

40S ribosomal protein, A

Ion channel, F

Membrane-spanning ATPase, F

Eukaryotic translation initiation factor 3, F

Alcohol dehydrogenase, F

Hsp98, F

Vesicle coat complex COPII, subunit Sec24 family protein, F

DNA binding protein SART-1, F

Wetting sample groups vs. dry

Annotation

Up W15m vs. dry

Down W15m vs. dry

Up W30m vs. dry

Down W30m vs. dry

Up W1h vs. Dry

Down W1h vs. dry

Up Wet vs. dry

Down Wet vs. dry

Short-chain dehydrogenase, putative, F

Enoyl-acyl-carrier-proteinreductase 1, F

Nuclear pore complex subunit Nup192, putative, F

Ion channel, F

Nuclear pore, complex Nup192, putative, F

Ion channel, F

DNA-directed RNA polymerase, F

Ion channel, F

Nuclear pore complex subunit Nup192, putative, F

Aspartic-type endopeptidase, putative, F

Riboflavin aldehyde-forming enzyme, F

Nitrite reductase, F

Swr1p complex component, F

Nitrite reductase, F

Cytochrome P450 family protein, F

Imidazole glycerol phosphate synthase, A

Mitochondrial molecular chaperone, F

NEDD8 conjugating enzyme, F

DNA-directed RNA polymerase, F

30 kDa heat shock protein, F

Riboflavin aldehyde-forming enzyme, F

Siroheme synthase, putative, F

Karyopherin, F

26S protease regulatory subunit, A

PaaI thioesterase family protein, putative, F

Eukaryotic translation initiation factor 3, F

Cytochrome P450 family protein, F

Siroheme synthase, putative, F

Cytochrome P450 family protein, F

30 kDa heat shock protein, F

Swr1p complex component, F

40S ribosomal protein, A

Alcohol dehydrogenase, F

DNA-directed RNA polymerase II subunit, F

Swr1p complex component, F

Copia-type polyprotein, F

DDHD domain protein, F

Imidazole glycerol phosphate synthase, A

Riboflavin aldehyde-forming enzyme, F

Molecular chaperone, F

Drying sample groups vs. dry

Annotation

Up D1h vs. dry

Down D1h vs. dry

Up D3h vs. dry

Down D3h vs. dry

Up D6h vs. dry

Down D6h vs. dry

Nuclear pore complex subunit Nup192, putative, F

Ion channel, F

Nuclear pore complex subunit Nup192, putative, F

Ion channel, F

Nuclear pore complex subunit Nup192, putative, F

Ion channel, F

UDP-glucose 4-epimerase, F

Nitrite reductase, F

T-complex protein 1, gamma subunit, F

Amino acid permease, putative, F

Phospholipase, F

Siroheme synthase, putative, F

Karyopherin, F

Siroheme synthase, putative, F

Phospholipase, F

Siroheme synthase, putative, F

DDHD domain protein, F

Siroheme synthase, F

Swr1p complex component, F

Siroheme synthase, F

Swr1p complex component, F

Translation initiation regulator, putative, F

T-complex protein 1, gamma subunit, F

Amino acid permease, putative, F

Cytochrome P450 family protein, F

Siroheme synthase, N-terminal domain containing protein, F

DDHD domain protein, F

Cation-transporting ATPase, F

Cytochrome P450 family protein, F

Cation-transporting ATPase, F

Drying sample groups vs. wet

Annotation

Up D1h vs. Wet

Down D1h vs. Wet

Up D3h vs. Wet

Down D3h vs. Wet

Up D6h vs. Wet

Down D6h vs. Wet

Dynamin GTPase, A

Nitrite reductase, F

Phospholipase, F

Cation-transporting ATPase, F

Phospholipase, F

Cation-transporting ATPase, F

Major royal jelly protein, F

Siroheme synthase, N-terminal domain containing protein, F

Mitochondrial carrier protein, putative, F

Translation initiation regulator, putative, F

Mitochondrial carrier protein, putative, F

Hsp98, F

CaaX farnesyltransferase alpha subunit, F

Hsp98, F

Nitrogen metabolite repression regulator, F

Hsp98, F

Benzoate 4-monooxygenase cytochrome P450, F

Ferric reductase NAD binding domain containing protein, A

U5 snRNP component, putative, F

Translation initiation factor IF-2, F

U5 snRNP component, putative, F

Ferric reductase NAD binding domain containing protein, A

MFS monosaccharide transporter, putative, F

bZIP transcription factor HacA, F

 

Vesicle coat complex COPII, subunit Sec24 family protein, putative, F

Ion channel, F

MFS monosaccharide transporter, putative, F

Polyketide synthase, putative, F

U5 snRNP component, putative, F

Ion channel, F

  1. Up = up-regulated genes, down = down-regulated genes, A = algal sequence, F = fungal sequence.