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Table 4 Comparative analysis of UV-8b BESs with the top ten fungal pathogens and four related fungal genomes

From: A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens

Fungus genome No. of masked BESs with BLAST hits1 No. of BES pairs with BLAST hits On the same chromosome, scaffold or contig In correct orientation2 Within 50–500 kb Correct orientation and within 50-500 kb
Species3 Length (Mb)(GC content) Scaffold or contig of more than 300 kb4     No. of mapping loci   No. of mapping loci   No. of mapping loci   No. of mapping loci
Magnaporthe oryzae 41.73 (51.55%) 40.87 (97.94%) 344 (5.24%) 7 5 6 2 2 1 1 0 0
Botrytis cinerea 42.66 (43.07%) 18.00 (42.19%) 118 (1.80%) 0 0 0 0 0 0 0 0 0
Puccinia graminis 88.72 (43.35%) 72.98 (82.25%) 12 (0.18%) 0 0 0 0 0 0 0 0 0
Fusarium graminearum 36.55 (48.28%) 36.09 (98.74%) 537 (8.19%) 30 14 21 6 8 7 8 2 2
Fusarium oxysporum 61.44 (48.38%) 57.76 (94.01%) 547 (8.34%) 27 12 15 7 9 6 7 3 4
Blumeria graminis 128.76 (43.97%) 20.65 (16.04%) 70 (1.07%) 0 0 0 0 0 0 0 0 0
Mycosphaerella graminicola 39.69 (52.14%) 39.69 (100.0%) 154 (2.35%) 0 0 0 0 0 0 0 0 0
Colletotrichum graminicola 51.64 (49.11%) 38.53 (74.60%) 533 (8.13%) 32 8 11 5 7 4 5 1 1
Ustilago maydis 19.68 (54.03%) 2.03 (10.34%) 62 (0.95%) 1 0 0 0 0 0 0 0 0
Melampsora laricis 101.13 (41.0%) 90.04 (89.04%) 16 (0.24%) 0 0 0 0 0 0 0 0 0
Metarhizium anisopliae 39.15 (51.49%) 32.46 (82.93%) 1234 (18.81%) 121 48 63 32 36 27 34 20 24
Trichoderma reesei 33.40 (52.83%) 30.50 (91.33%) 779 (11.88%) 55 15 25 5 7 7 15 2 4
Nectria haematococca 51.29 (50.79%) 42.25 (82.38%) 689 (10.50%) 41 19 27 8 11 13 18 5 7
Cordyceps militaris 32.27 (51.42%) 32.21 (99.82%) 679 (10.35%) 41 18 24 4 4 10 13 1 1
  1. 1Percentage relative to the total number of masked BESs (6,560).
  2. 2The two end sequences of the same clone hit to the “+” and “-” strand, respectively.
  3. 3Except that the Puccinia graminis, Ustilago maydis and Melampsora laricis were basidiomycetes, the other 7 of the top 10 pathogens all are ascomycetes.
  4. 4The accumulative length of scaffolds or contigs of more than 300 kb and percentage relative to the total length of assembled sequences.