Skip to main content

Table 4 Comparative analysis of UV-8b BESs with the top ten fungal pathogens and four related fungal genomes

From: A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens

Fungus genome

No. of masked BESs with BLAST hits1

No. of BES pairs with BLAST hits

On the same chromosome, scaffold or contig

In correct orientation2

Within 50–500 kb

Correct orientation and within 50-500 kb

Species3

Length (Mb)(GC content)

Scaffold or contig of more than 300 kb4

   

No. of mapping loci

 

No. of mapping loci

 

No. of mapping loci

 

No. of mapping loci

Magnaporthe oryzae

41.73 (51.55%)

40.87 (97.94%)

344 (5.24%)

7

5

6

2

2

1

1

0

0

Botrytis cinerea

42.66 (43.07%)

18.00 (42.19%)

118 (1.80%)

0

0

0

0

0

0

0

0

0

Puccinia graminis

88.72 (43.35%)

72.98 (82.25%)

12 (0.18%)

0

0

0

0

0

0

0

0

0

Fusarium graminearum

36.55 (48.28%)

36.09 (98.74%)

537 (8.19%)

30

14

21

6

8

7

8

2

2

Fusarium oxysporum

61.44 (48.38%)

57.76 (94.01%)

547 (8.34%)

27

12

15

7

9

6

7

3

4

Blumeria graminis

128.76 (43.97%)

20.65 (16.04%)

70 (1.07%)

0

0

0

0

0

0

0

0

0

Mycosphaerella graminicola

39.69 (52.14%)

39.69 (100.0%)

154 (2.35%)

0

0

0

0

0

0

0

0

0

Colletotrichum graminicola

51.64 (49.11%)

38.53 (74.60%)

533 (8.13%)

32

8

11

5

7

4

5

1

1

Ustilago maydis

19.68 (54.03%)

2.03 (10.34%)

62 (0.95%)

1

0

0

0

0

0

0

0

0

Melampsora laricis

101.13 (41.0%)

90.04 (89.04%)

16 (0.24%)

0

0

0

0

0

0

0

0

0

Metarhizium anisopliae

39.15 (51.49%)

32.46 (82.93%)

1234 (18.81%)

121

48

63

32

36

27

34

20

24

Trichoderma reesei

33.40 (52.83%)

30.50 (91.33%)

779 (11.88%)

55

15

25

5

7

7

15

2

4

Nectria haematococca

51.29 (50.79%)

42.25 (82.38%)

689 (10.50%)

41

19

27

8

11

13

18

5

7

Cordyceps militaris

32.27 (51.42%)

32.21 (99.82%)

679 (10.35%)

41

18

24

4

4

10

13

1

1

  1. 1Percentage relative to the total number of masked BESs (6,560).
  2. 2The two end sequences of the same clone hit to the “+” and “-” strand, respectively.
  3. 3Except that the Puccinia graminis, Ustilago maydis and Melampsora laricis were basidiomycetes, the other 7 of the top 10 pathogens all are ascomycetes.
  4. 4The accumulative length of scaffolds or contigs of more than 300 kb and percentage relative to the total length of assembled sequences.