Table 3 Annotation of DEGS in developing fibers of the im mutant

A. Ethylene & GA biosynthesis

Ghi.798.1.S1_s_at

2.04

0.54

0.19

1-aminocyclopropane-1-carboxylate (ACC) oxidase

Ghi.6164.1.A1_at

1.02

380.56

122.59

Gibberellin 20 oxidase

B. Cell wall metabolism

GhiAffx.63628.1.S1_at

0.71

0.48

0.24

Xyloglucan endotransglycosylase

GhiAffx.25797.1.S1_s_at

1.58

0.39

0.38

Pectinesterase family protein

Ghi.5186.1.A1_at

1.37

0.03

0.09

Pectin methylesterase

Ghi.8667.1.A1_at

1.14

0.28

0.26

Sucrose synthase

Gra.569.1.A1_s_at

0.69

1.25

2.01

β-amylase

C. Stress related genes

C-1. Stress related transcription factors

Ghi.3815.1.A1_at

1.58

0.50

0.33

WRKY transcription factor

GhiAffx.30199.1.S1_at

1.27

0.87

0.28

WRKY transcription factor

Ghi.10747.1.S1_at

1.57

0.11

0.40

Ethylene-responsive element binding protein ERF5

GhiAffx.6226.1.S1_at

0.87

0.50

0.45

AP2-ERF transcription factor

GbaAffx.196.1.A1_s_at

0.90

0.16

0.32

AP2-ERF transcription factor

Ghi.7874.1.S1_s_at

0.94

0.15

0.28

AP2-ERF transcription factor

Ghi.6538.1.S1_at

1.05

0.50

0.31

NAC transcription factor

Ghi.3264.2.A1_s_at

1.03

0.26

0.51

NAC transcription factor

Ghi.4770.1.S1_at

0.90

1.28

0.25

myb family transcription factor

GraAffx.1750.1.S1_s_at

0.89

1.35

0.25

myb family transcription factor

Ghi.8087.1.S1_s_at

0.99

1.50

0.21

myb-like transcription factor 3

C-2. Temperature stress related genes

GhiAffx.41577.1.S1_s_at

0.19

0.52

3.73

17.3 kDa class I heat shock protein

GhiAffx.25696.1.S1_at

0.12

0.30

2.92

22.0 kDa class IV heat shock protein precursor

Ghi.4957.1.S1_s_at

1.48

2.66

2.58

70 kda heat shock protein

GhiAffx.25696.1.S1_at

0.12

0.30

2.92

22.0 kDa class IV heat shock protein precursor

GhiAffx.2754.1.A1_at

1.00

0.80

6.79

Cytosolic class small heat shock protein type 2

GhiAffx.34159.1.A1_a_at

0.24

0.79

6.21

Heat shock protein 18

GhiAffx.41577.1.S1_s_at

0.19

0.52

3.73

Low molecular weight heat shock protein

Ghi.8364.1.A1_at

0.77

0.24

0.31

Heat shock protein

C-3. Water stress related genes

Ghi.4632.1.A1_at

1.08

1.32

0.42

Early-responsive to dehydration expressed

Gra.840.1.A1_at

0.95

0.92

0.21

Alcohol dehydrogenase a

GarAffx.29310.2.S1_s_at

0.90

0.93

0.19

Alcohol dehydrogenase a

Ghi.10646.1.S1_s_at

0.76

0.93

0.31

Osmotin precursor

Ghi.1478.1.S1_s_at

0.65

0.48

0.44

Aquaporin protein PIP1

GraAffx.33059.2.S1_s_at

0.58

0.48

0.44

Aquaporin protein PIP1

GhiAffx.52815.1.S1_at

0.90

5.59

4.86

Putative aquaporin PIP1

Ghi.766.1.S1_at

0.91

5.21

3.87

Aquaporin PIP1

C-4. Pathogen responsive genes

GhiAffx.41878.1.S1_at

39.35

11.57

1.27

TIR-NBS-LRR type disease resistance protein

Ghi.8619.1.A1_at

4.38

2.68

2.43

TIR-NBS-LRR type disease resistance protein

Ghi.8798.1.S1_at

1.05

1.11

0.37

TIR-NBS-LRR type disease resistance protein

Ghi.1498.1.S1_s_at

0.80

0.78

0.41

Receptor protein kinase clavata1

Ghi.5675.1.A1_x_at

0.48

0.47

0.30

14 kda proline-rich protein

GbaAffx.198.1.S1_at

1.69

0.87

0.27

Proline-rich protein

GbaAffx.198.1.S1_s_at

1.60

0.85

0.26

Proline-rich protein

Ghi.7872.1.S1_s_at

0.59

1.22

0.07

Proline-rich glycoprotein

Ghi.6523.1.S1_s_at

1.37

0.41

0.36

Pathogenesis-related protein 10

GbaAffx.201.1.S1_s_at

1.49

0.35

0.36

Pathogenesis-related protein 10

D. Ribosomal proteins

GraAffx.15288.1.S1_s_at

0.86

0.45

0.78

Ribosomal protein L3A

Ghi.4198.4.S1_s_at

0.43

0.37

0.36

60S acidic ribosomal protein P0

E. Lipid metabolism

Ghi.6324.1.A1_x_at

1.01

1.28

0.24

Lipid transfer protein

Gra.378.1.A1_s_at

0.29

0.82

0.18

Lipid transfer protein

Ghi.6175.2.S1_s_at

0.29

0.83

0.16

Lipid transfer protein

Ghi.576.3.A1_x_at

7.97

31.71

14.65

Glycerol-3-phosphate acyltransferase

Ghi.8520.1.S1_at

1.13

2.04

2.44

Delta-6 desaturase