Rough colony morphology of Mycobacterium massiliense Type II genotype is due to the deletion of glycopeptidolipid locus within its genome

Kim, Byoung-Jun; Kim, Bo-Ram; Lee, So-Young; Kook, Yoon-Hoh; Kim, Bum-Joon

doi:10.1186/1471-2164-14-890

Table 1 GPL biosynthesis related genes of M. abscessus, M. massiliense, M. massiliense type II, M. chelonae and M. smegmatis

From: Rough colony morphology of Mycobacterium massiliense Type II genotype is due to the deletion of glycopeptidolipid locus within its genome

M. abscessus ^a			M. massiliense ^b		M. massilienseType II^c		M. chelonae ^d		M. smegmatis ^e
Gene	Locus_tag	Description	Locus_tag	ID (%)	Locus_tag	ID (%)	Locus_tag	ID (%)	Locus_tag	ID (%)
mmpS4	MAB_4117c	Putative membrane protein, MmpS family	MMAS_40600	100	MASS_4116	100	MC1618	95	MSMEG0373	78
mmpL4a	MAB_4116c	Putative membrane protein, MmpL	MMAS_40590	100	MASS_4115	100	MC1619	95	MSMEG0374	78
mmpL4b	MAB_4115c	Putative membrane protein, MmpL	MMAS_40580	99	MASS_4114	99	MC1620	92	MSMEG0375	76
Rv1174	MAB_4114c	Conserved hypothetical protein	MMAS_40570	99	MASS_4113	99	MC1621c	89	MSMEG0376	48
rmlA	MAB_4113	Glucose-1-phosphate thymidylyltransferase	MMAS_40560	100	MASS_4112	100	MC1622c	97	MSMEG0377	85
gtf3	MAB_4112c	Putative glycosyltransferase GtfA	MMAS_40540	98	MASS_4110	99	MC1623	88	MSMEG0378	70
rmlB	MAB_4111c	Putative epimerase/dehydratase	MMAS_40530	99	MASS_4109	99	MC1624	93	MSMEG0379	78
atf2	MAB_4110c	Probable acetyltransferase AtfA	MMAS_40520	97			MC1625	89
rmt2	MAB_4109c	Putative methyltransferase	MMAS_40510	98			MC1626	82	MSMEG0380	72
rmt4	MAB_4108c	Methyltransferase MtfB	MMAS_40500	99			MC1627	96	MSMEG0381	83
gtf1	MAB_4107c	Glycosyltransferase GtfA	MMAS_40490	99			MC1628	92	MSMEG0382	76
atf1	MAB_4106c	Acetyltransferase	MMAS_40480	98			MC1629	89	MSMEG0383	72
rmt3	MAB_4105c	Methyltransferase MtfD	MMAS_40470	100			MC1630	92	MSMEG0384	81
gtf2	MAB_4104c	Putative glycosyltransferase GtfB	MMAS_40460	97			MC1631c	81	MSMEG0385	67
fmt	MAB_4103c	Probable methyltransferase	MMAS_40450	99			MC1632	85	MSMEG0386	68
mbtH	MAB_4100c	MbtH-like protein	MMAS_40430	99	MASS_4722	86	MC1635	100	MSMEG0387	91
mps1	MAB_4099c	Probable non-ribosomal peptide synthetase	MMAS_40410	99			MC1636	86	MSMEG0390	70
mps2	MAB_4098c	Probable peptide synthetase NRP	MMAS_40400	99			MC1637	91	MSMEG0392	72
gap	MAB_4097c	Conserved hypothetical protein	MMAS_40390	99	MASS_4108	99	MC1638	85	MSMEG0393	58
sap	MAB_4454c	Conserved hypothetical protein (DGPF family)	MMAS_43620	99	MASS_4488	98	MC1299	94	MSMEG0394	31
ecf	MAB_4459c	RNA polymerase sigma-70 factor, ECF subfamily	MMAS_43670	98	MASS_4493	96	MC1294	85	MSMEG0395	47
fadE5	MAB_4437	Probable acyl-CoA dehydrogenase FadE	MMAS_43460	99	MASS_4474	99	MC1318c	96	MSMEG0396	78
Rv0926	MAB_4633	Conserved hypothetical protein	MMAS_45360	99	MASS_4660	99	MC1136c	91	MSMEG0397	36
pks	MAB_0939	Probable polyketide synthase	MMAS_07820	99	MASS_0923	98	MC0819	90	MSMEG0398	79
papA3	MAB_0938c	Probable conserved polyketide synthase associated protein PapA3	MMAS_07800	99	MASS_0922	99	MC0818c	92	MSMEG0399	78
mmpL10	MAB_0937c	Putative membrane protein, MmpL family	MMAS_07790	99	MASS_0921	99	MC0817c	95	MSMEG0400	75
PE	MAB_0936c	Conserved hypothetical protein	MMAS_07780	99	MASS_0920	99	MC0816c	89	MSMEG0402	64
fadD23	MAB_0935c	acyl-CoA synthetase	MMAS_07770	99	MASS_0919	99	MC0815c	88	MSMEG0401	73
gap-like	MAB_0934	Conserved hypothetical integral membrane protein	MMAS_07760	98	MASS_0918	98	MC0814	88	MSMEG0403	54

^aAccession number: NC_010397 (13).
^bAccession number: AKVF00000000 (24).
^cAccession number: CP004374 (20).
^dAccession number: AM231610-AM231615 (13).
^eAccession number: AY439015 (13).

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ISSN: 1471-2164

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