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Table 1 Overview of protein and transcript that are significantly differentially expressed in the targeted OnPLS model

From: OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants

JGI V2.2 ID MapMan name MapMan symbol AS-SOD9 AS-SOD24
    P / T P / T
POPTR_0002s14740 Amino acid metabo. 3-phosphoshikimate 1-carboxyvinyltransferase / /
POPTR_0013s05850   ATCIMS (cobalamin-independent methionine synthase) / /
POPTR_0010s16420 Cell wall RGP3 (reversibly glycosylated polypeptide 3) / /
POPTR_0017s13350   RGP2 (reversibly glycosylated polypeptide 2) / /
POPTR_0017s12760   UDP-glucose 6-dehydrogenase / /
POPTR_0009s13270 Cell.cycle Peptidyl-prolyl cis-trans isomerase/cyclophilin (CYP2)/rotamase / /
POPTR_0003s21080 Cell.organisation TUA5 (tubulin alpha-5) / /
POPTR_0002s09610   ANNAT1 (annexin arabidopsis 1) / /
POPTR_0001s31700   ACT7 (actin 7) / /
POPTR_0001s04180   TUA5 (tubulin alpha-5) / /
POPTR_0001s29670   TUA6 (tubulin alpha-6 chiain) / /
POPTR_0002s11250   TUA6 (tubulin alpha-6 chiain) / /
POPTR_0006s15090 DNA.synthesis 3, NFA3 / /
POPTR_0009s03310   H2B/HTB2 (histone h2b) / /
POPTR_0016s12760 Fermentation Pyruvate decarboxylase / /
POPTR_0001s38560 Gluconeogenesis Malate dehydrogenase (NAD), mitochondrial / /
POPTR_0006s17940 Glycolysis Fructose-bisphosphate aldolase / /
POPTR_0015s14380   LOS2 (low expression of osmotically responsive genes 1) / /
POPTR_0010s06560   GAPDH.3 (glyceraldehyde-3-phosphate dehydrogenase (GAPDH)) / /
POPTR_0012s09570   GAPDH 1.1 / /
POPTR_0006s11400   2,3-biphosphoglycerate-independent phosphoglycerate mutase / /
POPTR_0002s23510 Hormone metabolism ATB2 / /
POPTR_0001s05100 Lipid metabolism. MOD1 (mosaic death 1) / /
POPTR_0007s01850 Major CHO metabolism pfkB-type carbohydrate kinase family protein / /
POPTR_0002s14730   Transketolase / /
POPTR_0001s05690   AAC2 (ADP/ATP carrier 2) / /
POPTR_0002s25950 Misc. Acid phosphatase class B family protein / /
POPTR_0006s18240   GDSL-motif lipase/hydrolase family protein / /
POPTR_0010s15250   Tropinone reductase, putative/tropine dehydrogenase / /
POPTR_0007s07960 N-metabolism ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1) / /
POPTR_0013s05480   GDH1 (glutamate dehydrogenase 1) / /
POPTR_0001s10670 Nucleotide metabolism NDPK1 (nucleoside diphosphate kinase 1) / /
POPTR_0001s32490 Protein.aa activation Methionine--tRNA ligase, putative/methionyl-tRNA synthetase / /
POPTR_0006s24090 Protein.degradation APM1 (aminopeptidase M1) / /
POPTR_0016s12720   ATG2 (G2p-related protein) / /
POPTR_0005s02520   RPT5A (regulatory particle triple-A 5A) / /
POPTR_0018s14290   PBA1 (20S proteasome beta subunit A 1) / /
POPTR_0009s15910 Protein.folding Chaperonin / /
POPTR_0001s35790 Protein.folding Chaperonin / /
POPTR_0001s14040   HSP60 (Heat shock protein 60) / /
POPTR_0008s04230 Protein.synthesis Elongation factor 1-alpha/EF-1-alpha / /
POPTR_0001s23190   Elongation factor 1-beta/EF-1-beta / /
POPTR_0012s09840   Elongation factor 1-beta, putative/EF-1-beta / /
POPTR_0002s05220    / /
POPTR_0009s12150   40S ribosomal protein S25 (RPS25B) / /
POPTR_0016s05530   40S ribosomal protein S2 (RPS2C) / /
POPTR_0008s04400   40S ribosomal protein S23 (RPS23B) / /
POPTR_0006s21210   ATRPS5B (ribosomal protein 5B) / /
POPTR_0004s09830   40S ribosomal protein S25 (RPS25B) / /
POPTR_0001s26950   40S ribosomal protein S8 (RPS8B) / /
POPTR_0002s24410   60S ribosomal protein L13A (RPL13aC) / /
POPTR_0002s14250   60S ribosomal protein L15 (RPL15A) / /
POPTR_0012s03450   60S ribosomal protein L19 (RPL19B) / /
POPTR_0004s07620   60S ribosomal protein L19 (RPL19B) / /
POPTR_0001s35630   60S ribosomal protein L27 (RPL27C) / /
POPTR_0008s05970   60S ribosomal protein L35a (RPL35aC) / /
POPTR_0018s13700   60S ribosomal protein L7 (RPL7C) / /
POPTR_0002s18010   60s acidic ribosomal protein P1 / /
POPTR_0013s01220 Protein.targeting AT-IMP (Arabidopsis thaliana importin alpha) / /
POPTR_0002s19210   ATARFA1E (ADP-ribosylation factor A1E) / /
POPTR_0008s12550 PS.lightreaction. ATP synthase beta chain 2, mitochondrial / /
POPTR_0006s11570 Redox. ATMDAR1 (monodehydroascorbate reductase 1) / /
POPTR_0006s13440   APX2 (ascorbate peroxidase 2) / /
POPTR_0001s44990   TPX1 (thioredoxin-dependent peroxidase 1) / /
POPTR_0003s11350   ATHIP1 ( HSP70-interacting protein 1) / /
POPTR_0005s25420   ATTRX1 (Arabidopsis thaliana thioredoxin H-type 1) / /
POPTR_0002s19940   ATPDIL2-1/MEE30/UNE5 (PDI-like 2–1) / /
POPTR_0014s15820   ATPDIL2-2 (PDI-like 2–2) / /
POPTR_0018s03000 RNA Chloroplast nucleoid DNA-binding protein / /
POPTR_0004s16260   ATGRP7 (cold, circadian rhythm, and rna binding 2) / /
POPTR_0002s03580 Secondary metabolism Isoflavone reductase / /
POPTR_0002s10000 Signaling GRF2 (general regulatory factor 2) / /
POPTR_0004s17840 Stress.abiotic.cold ATGRP2B (glycine-rich protein 2B) / /
POPTR_0001s18040   HSP91 (heat shock protein 91) / /
POPTR_0009s08320   mtHSC70-2 (heat shock protein 70) / /
POPTR_0004s04450   Pollen Ole e 1 allergen and extensin family protein / /
POPTR_0008s16670 TCA Malate dehydrogenase, cytosolic / /
POPTR_0004s07320 TCA Isocitrate dehydrogenase / /
POPTR_0013s11070 Transport.misc SEC14 cytosolic factor family protein / /
POPTR_0001s36710 Not assigned 2-oxoacid dehydrogenase family protein / /
POPTR_0010s16050   Stable protein 1-related / /
POPTR_0602s00200   VEP1 (vein patterning 1) / /
POPTR_0017s10720   Unknown protein / /
POPTR_0017s13710   Unknown protein / /
POPTR_0005s26930   Unknown protein / /
  1. Columns indicate Populus trichocarpa gene ID; Mapman name with similar classes grouped in rows; Mapman symbol; and AS-SOD9, AS-SOD24 protein (P) and transcript (T) expression levels, respectively. Symbols indicate: ↑, upregulated (relative to WT); ↓, downregulated; - not significantly differentiated expression. Data shown in Additional file 2: Table S2.2, Additional file 2: Table S1.2.