BMC Genomics

Table 1 A comparison of the major classes of repetitive sequences in sex chromosomal and autosomal BAC clones in Pogona vitticeps

From: Sequence and gene content of a large fragment of a lizard sex chromosome and evaluation of candidate sex differentiating gene R-spondin 1

Repeat class	Sex chromosome BAC clones										Autosome BAC clone
	Pv03_L07 (98 kb)		Pv151_P16 (183 Kb)		Pv159_B13 (113 Kb)		Pv237_P23 (202 kb)		Pv151_D05 (156 Kb)		Pv176_G09 (145 Kb)		Pv100_O13 (139 kb)		Pv215_D15 (134 Kb)
	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)	Fragments	Size (bp)
Integrated virus	0	0	0	0	1	47	1	47	0	0	0	0	0	0	0	0
Interspersed repeat	1	49	3	254	2	126	1	49	1	77	2	165	0	0	0	0
DNA transposon	30	2872	53	4050	37	3250	69	5288	58	4343	58	5283	49	6140	40	4906
Endogenous retrovirus	23	5252	39	6836	9	489	16	1036	11	726	25	1888	16	1132	14	990
LTR transposon	37	12385	87	25553	48	9078	82	12342	61	5673	44	3613	66	4350	71	5287
Non-LTR transposon	58	17770	101	28645	74	17366	148	46284	121	40003	46	5767	51	5000	54	5448
Pseudogene	0	0	0		0	0	1	68	1	68	2	173	0	0	0	0
Simple repeat	21	2189	35	3743	6	597	37	3710	29	2941	0	0	2	137	2	133
Total	170	40517	318	69081	177	30953	355	68824	282	53831	177	16889	184	16759	181	16764
Proportion (%)		41.3439		37.74918		27.392		34.0713		34.5071		11.6476		13.9658		10.4775

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com