Table 1 Differentially-expressed miRNAs between CMS and MF of Brassica juncea
UNIQID | Description | norm_MF | norm_CMS | AC 1 2 | Fisher 1 2 | Chi2x2 1 2 | CMS/MF |
|---|---|---|---|---|---|---|---|
ath-MIR156a-p3 | TGCTCACTGCTCTTTCTGTCAGA | 50 | 0 | 0 | 0 | 0 | down |
ath-MIR156e-p3 | GCTTACTCTCTCTCTGTCACC | 91 | 9 | 0 | 0 | 0 | down |
ath-miR156h_L + 1 | TTGACAGAAGAAAGAGAGCAC | 14 | 47 | 0.000005 | 0.000027 | 0.000024 | up |
ath-miR158a | TCCCAAATGTAGACAAAGCA | 31 | 1 | 0 | 0 | 0 | down |
ath-miR159a | TTTGGATTGAAGGGAGCTCTA | 3375 | 5739 | 0 | 0 | 0 | up |
ath-MIR159a-p5 | AGCTGCTAAGCTATGGATCCC | 54 | 12 | 0 | 0 | 0 | down |
ath-miR159c_R-2 | TTTGGATTGAAGGGAGCTC | 77 | 17 | 0 | 0 | 0 | down |
ath-miR164a | TGGAGAAGCAGGGCACGTGCA | 253 | 472 | 0 | 0 | 0 | up |
ath-miR164b | TGGAGAAGCAGGGCACGTGCA | 253 | 472 | 0 | 0 | 0 | up |
ath-miR164c | TGGAGAAGCAGGGCACGTGCG | 102 | 51 | 0.000006 | 0.000046 | 0.000037 | down |
ath-MIR164c-p3 | CACGTGTTCTACTACTCCAAC | 1 | 17 | 0.000034 | 0.000145 | 0.000162 | up |
ath-miR165a | TCGGACCAGGCTTCATCCCCC | 3116 | 4420 | 0 | 0 | 0 | up |
ath-miR165b | TCGGACCAGGCTTCATCCCCC | 3116 | 4420 | 0 | 0 | 0 | up |
ath-miR166a | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166b | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166c | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166d | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166e | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166f | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR166g | TCGGACCAGGCTTCATTCCCC | 2589 | 3591 | 0 | 0 | 0 | up |
ath-miR167a | TGAAGCTGCCAGCATGATCTA | 6244 | 864 | 0 | 0 | 0 | down |
ath-MIR167a-p3 | GATCATGTTCGCAGTTTCACC | 568 | 83 | 0 | 0 | 0 | down |
ath-miR167b | TGAAGCTGCCAGCATGATCTA | 6244 | 864 | 0 | 0 | 0 | down |
ath-miR167d_R-2 | TGAAGCTGCCAGCATGATCT | 359 | 42 | 0 | 0 | 0 | down |
ath-MIR169e-p3 | GCAAGTTGACTTTGGCTCTGT | 141 | 39 | 0 | 0 | 0 | down |
ath-miR319a | TTGGACTGAAGGGAGCTCCCT | 45330 | 82597 | 0 | 0 | 0 | up |
ath-miR319b | TTGGACTGAAGGGAGCTCCCT | 45330 | 82597 | 0 | 0 | 0 | up |
ath-MIR319b-p5 | GAGCTTTCTTCGGTCCACTC | 0 | 20 | 0 | 0.000002 | 0.000008 | up |
ath-miR390a | AAGCTCAGGAGGGATAGCGCC | 289 | 527 | 0 | 0 | 0 | up |
ath-MIR390a-p3_1ss5AG | CGCTGTCCATCCTGAGTTTCA | 52 | 102 | 0.000009 | 0.000069 | 0.000056 | up |
ath-miR390b | AAGCTCAGGAGGGATAGCGCC | 289 | 527 | 0 | 0 | 0 | up |
ath-miR395a | CTGAAGTGTTTGGGGGAACTC | 36 | 7 | 0.000002 | 0.000009 | 0.00001 | down |
ath-miR395d | CTGAAGTGTTTGGGGGAACTC | 36 | 7 | 0.000002 | 0.000009 | 0.00001 | down |
ath-miR395c | CTGAAGTGTTTGGGGGAACTC | 36 | 7 | 0.000002 | 0.000009 | 0.00001 | down |
ath-miR396b | TTCCACAGCTTTCTTGAACTT | 260 | 171 | 0.000002 | 0.000021 | 0.000018 | down |
ath-miR408 | ATGCACTGCCTCTTCCCTGGC | 805 | 1272 | 0 | 0 | 0 | up |
ath-MIR408-p5 | ACAGGGAACAAGCAGAGCATG | 39 | 117 | 0 | 0 | 0 | up |
ath-miR845a | CGGCTCTGATACCAATTGATG | 121 | 53 | 0 | 0 | 0 | down |
peu-MIR2916-p3 | TCTCAACCATAAACGATGCCGACC | 523 | 335 | 0 | 0 | 0 | down |
peu-MIR2916-p5 | GTCTCAACCATAAACGATGCCGAC | 316 | 228 | 0.000014 | 0.000185 | 0.000161 | down |
ahy-miR167-5p_1ss21TC | TGAAGCTGCCAGCATGATCTC | 80 | 2 | 0 | 0 | 0 | down |
ahy-miR159_1ss7TC | TTTGGACTGAAGGGAGCTCTA | 33 | 6 | 0.000003 | 0.000014 | 0.000015 | down |
rco-miR319d_2ss20TC21TA | TTGGACTGAAGGGAGCTCCCA | 201 | 83 | 0 | 0 | 0 | down |
peu-MIR2911-p3_1ss6CT | GCGTGTCGGCCGGGGGACGGGCTG | 19 | 0 | 0.000001 | 0.000004 | 0.000013 | down |
peu-MIR2911-p5_1ss3TA | GGAGGACTGCTCGAGCTGC | 18 | 1 | 0.000018 | 0.000076 | 0.000096 | down |
smo-MIR1103-p3 | GTGACCTCCCGGGAAGTCC | 179 | 117 | 0.000034 | 0.000374 | 0.000313 | down |
PC-3p-77 | GCGATTTGTCTGGTTAATTCCGTT | 199 | 94 | 0 | 0 | 0 | down |