Skip to main content

Table 4 Selection signatures detected by XP-EHH for all ten breeds

From: A genome-wide scan for signatures of differential artificial selection in ten cattle breeds

Control Breed

Case Breed

 

GLW

BBB

RH

BBV

OBV

MWF

FGV

DFV

ABB

IMB

GLW

-

51

62

77

60

69

45

53

26

11

BBB

71

-

50

37

46

45

42

50

18

22

RH

63

76

-

82

44

90

58

70

16

33

BBV

139

117

130

-

62

217

118

115

23

14

OBV

86

78

64

118

-

76

63

82

25

19

MWF

32

60

42

39

32

-

47

64

18

18

FGV

65

66

52

95

49

75

-

73

20

19

DFV

65

80

72

100

45

79

67

-

19

18

Total a)

199

232

217

201

175

414

290

269

123

129

Final

128

144

131

140

100

229

153

151

43

32

SNP/Signature

11.64

7.38

10.00

14.11

8.79

5.48

5.37

7.19

3.02

2.59

N e5

110.74

68.36

111.48

84.45

92.31

52.64

109.95

126.53

183.70

149.76

N e50

282.55

322.29

388.91

254.77

425.88

283.17

463.48

548.95

1680.69

1054.34

N e5 /N e50

0.39

0.21

0.29

0.33

0.22

0.19

0.24

0.23

0.11

0.14

  1. For each analysed breed (Case Breed) there is a column showing the number of significant selection signatures detected in comparison to the respective “Control Breed”, the number of significant selection signatures including singletons (Total), the number of signatures confirmed by neighbouring markers and/or multiple significant breed-comparisons (Final), the average number of SNPs per final signature (SNPs/Signature), the effective population sizes of 5 (Ne 5 ), and 50 (Ne 50 ) generations ago as well as their ratio (Ne 5 /Ne 50 ).
  2. a)As the same signature can be detected by comparison of one breed to several others, this is not simply the sum of all significant signatures.