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Figure 3 | BMC Genomics

Figure 3

From: Divergent transcription is associated with promoters of transcriptional regulators

Figure 3

Regulation of LUAT and associated genes during early T-cell differentiation. A) Percentage of thymocyte-specific genes in the LUAT-associated gene sets from either DP or DN (ΔRag) thymocytes or in control sets of similarly expressed genes (see Methods). The p values results from a Chi-2 test are shown. B) Scatterplot showing the log2 ratio of Total RNA-seq signals (FPKM) between DN (ΔRag) and DP thymocytes (both from Illumina platform) for LUAT and associated genes. Shown in red are LUATs and associated gene pairs which are both considered as differentially expressed (2-fold change). C) Examples of co-regulated LUATs and associated genes between DN (ΔRag) and DP thymocytes. The Total RNA-seq signal for the plus and minus strands is shown. Legends are as in Figure 1B.

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