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Table 4 JunD binding events in WKY and WKY.L Crgn2 BMDMs

From: Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages

Dataset Total number of peaks identified Number of peaks linked to a gene Number of genes containing at least one JunD peak
WKY basal 27124 12522 5339
WKY LPS 36687 18124 7612
WKY.LCrgn2 basal 16593 6408 2606
WKY.LCrgn2 LPS 8689 3361 1022
  1. Peaks were identified using BayesPeak v1.1.3 [22, 23] using a posterior probability threshold of 0.9. Peaks were linked to a gene if they were located within 20 kilobases of the transcriptional start site or were located within the body of the gene.