Combined ChIP-Seq and transcriptome analysis identifies AP-1/JunD as a primary regulator of oxidative stress and IL-1β synthesis in macrophages

Table 4 JunD binding events in WKY and WKY.L Crgn2 BMDMs

Dataset	Total number of peaks identified	Number of peaks linked to a gene	Number of genes containing at least one JunD peak
WKY basal	27124	12522	5339
WKY LPS	36687	18124	7612
WKY.LCrgn2 basal	16593	6408	2606
WKY.LCrgn2 LPS	8689	3361	1022

Peaks were identified using BayesPeak v1.1.3 [22, 23] using a posterior probability threshold of 0.9. Peaks were linked to a gene if they were located within 20 kilobases of the transcriptional start site or were located within the body of the gene.

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