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Table 1 Summary Illumina sequencing statistics

From: Transcriptomic and genomic evidence for Streptococcus agalactiae adaptation to the bovine environment

Strain

Growth environment

Replicate

Total number of reads

Number of aligned reads

NEM316

Milk

1

29,089,124

27,350,545

NEM316

Milk

2

40,554,665

38,161,713

NEM316

Milk

3

35,497,113

33,357,550

NEM316

Broth

1

23,013,312

21,250,407

NEM316

Broth

2

23,145,072

21,484,496

CCUG 37738

Milk

1

20,106,316

7,516,242

CCUG 37738

Milk

2

16,800,749

6,494,892

CCUG 37738

Milk

3

28,308,724

11,028,696

CCUG 37738

Broth

1

44,274,054

19,357,826

CCUG 37738

Broth

2

27,893,761

11,196,100

CCUG 37738

Broth

3

17,763,818

7,925,653

FSL S3-586

Milk

1

29,138,705

8,033,022

FSL S3-586

Milk

2

27,373,266

4,909,064

FSL S3-586

Milk

3

16,688,288

6,786,044

FSL S3-586

Broth

1

15,172,203

4,505,824

FSL S3-586

Broth

2

21,093,103

6,750,884

  1. The average proportion of reads passing the Illumina quality filter for each replicate was 94.6% (range = 93-97%). The number of aligned reads excludes reads ambiguously aligned to multiple locations within the respective genome sequence.