Skip to main content

Table 1 Distribution of transcript-specific probes and transcript-specific probe-clusters across platforms

From: TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes

No. of transcript-specific probes No. of transcript specific probe-clusters
HG U133 Plus 2 Mouse 430 2 HG U133 A MG U74 Av2 Rat 230 2
STGs* MTGs** STGs MTGs STGs MTGs STGs MTGs STGs MTGs
1 129 363 120 143 86 185 67 32 150 83
2 104 192 108 69 61 107 70 27 128 42
3 77 106 80 51 40 53 91 22 107 21
4 95 88 103 48 58 39 49 15 129 15
5 83 60 78 28 51 26 42 10 139 13
6 108 68 112 16 82 47 44 9 158 10
7 147 49 131 23 110 22 56 7 184 6
8 252 63 189 32 181 33 55 11 267 19
9 444 87 308 33 365 51 73 7 510 14
10 910 137 617 48 718 77 54 9 1029 33
11 4850 662 7006 398 3475 342 88 12 5973 135
> = 12 4734 383 5007 219 1941 130 5587 219 2565 40
Total no. of transcripts*** 11933 2258 13859 1108 7168 1112 6276 380 11339 431
Total no. of genes 11933 1773 13859 892 7168 953 6276 340 11339 385
Total no. of transcript specific probes 195511 21305 218403 11436 101603 9327 102472 4473 99287 1903
  1. *STGs: transcripts from single-transcript-genes (transcripts to which the probe-clusters uniquely map).
  2. **MTGs: transcripts from multi-transcript-genes (transcripts to which the probe-clusters uniquely map).
  3. ***Total number of transcript-specific probe-clusters is same as total number of transcripts.