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Table 1 Genome statistics

From: The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda

Species

Approximate #

Estimated

Median †

Median †

GC

Source

 

genome size

repeat content

exon length

intron length

content

 

C.elegans

100Mb

17% (16.5%)

145bp

69bp

38%

[17, 18]

P. pacificus

165Mb

15.3% (17%)

85bp

141bp

42%

[20, 25]

A. suum

334Mb

4.4%

144bp

907bp

37.9%

[21, 40]

B. malayi

95Mb

16.5% (15%)

140bp

219bp

30%

[22]

B. xylophilus

69Mb

22,5%

183bp

69bp

40%

[25]

M. incognita

∼200Mb

36,7%

136bp

82bp

31%

[24]

T. spiralis

63Mb

19.8% (18%)

128bp

283bp

34%

[27]

R. culicivorax

>270Mb

48.2%

161bp

405bp

36%

this work

  1. Repeat content of different nematode genomes appears not to be directly correlated with genome size. Re-calculation in selected genomes shows little deviance from published data (in parentheses) ∗and thus indicates the validity of our inference for R. culicivorax.
  2. ∗For B. xylophilus and M. incognita only reference data is given as the same programs were used for initial inference (see references); A. suum not re-calculated.
  3. #M. incognita genome size given as 86Mbp in [24] has been re-estimated to about 150Mbp (E. Danchin pers. comm.).
  4. ‡Median lengths for A. suum and T. spiralis were calculated in this work as these data are not given in the cited publications.