Antagonistic, overlapping and distinct responses to biotic stress in rice (Oryza sativa) and interactions with abiotic stress

Table 1 Overview of the Affymetrix rice genome microarrays used for the analysis in this study

Sample details	GEO accession	Rep	No. arrays	Tissue	Publications
Biotic stress - Rice
X.oryzae pv oryzae bacterial infection cv. IRBB21 (resistant), IR24 (susceptible)	GSE43050	3	24	Leaf	This study
Infection with X.oryzae pv. oryzicola bacterial infection cv. Nipponbare	GSE19239	3	6	Leaf	[16]
S.Hermonthica plant parasite infection cv. Nipponbare (resistant), IAC165 (susceptible)	GSE10373	2	24	Root	[14]
M.grisea blast fungus infection cv. Nipponbare	GSE7256	2	8	Leaf	[13]
M.oryzae fungus infection cv. Nipponbare	GSE18361	2	6	Root	[19]
Rice stripe virus infection cv. WuYun3, KT95-418	GSE11025	3	12	Seedling	-
Abiotic stress - Rice
Drought, salt, cold stress cv. IR64	GSE6901	3	12	Seedling	[17]
Heat stress cv. Zhonghua 11	GSE14275	3	6	Seedling	[18]

The microarray experiments are classified as biotic and abiotic stress. For each microarray dataset, a brief experimental description is given with the respective cultivar (cv.) indicated, reference (where available), public Gene Expression Omnibus (GSE) identifier or MIAME Genexpress identifier (E-MEXP), the number of biological replications carried out (Reps), the number of arrays carried out in that experiment and the tissue analysed are shown.

ISSN: 1471-2164