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Table 2 C/D box snoRNA candidates identified in T. rubrum

From: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum

   Genome position Homologues   
Name Lena Chromosome Start End Location Accession1 Genes Putative target(s) Accession2
TRnc_1010 87 supercont2.10 749220 749306 3′UTR RF00477 snosnR66   KC353070
TRnc_1157 95 supercont2.11 539262 539356 Intron RF00093 SNORD18, U18 25S: Am651, Gm654; 18S: Am1159 KC353075
TRnc_1271 242 supercont2.12 280437 280196 Intron RF01152 sR1 25S: Am2268, Am3277,Cm964,Cm961;U5: Cm103; 18S: Am1540 KC353083
TRnc_1272 265 supercont2.12 280712 280448 Intron RF01152 sR1 25S: Cm964, Cm961;18S: Um604; U5: Cm103 KC353084
TRnc_1299 109 supercont2.13 24837 24729 Intron RF00593 snoU83B   KC353086
TRnc_1359 97 supercont2.14 159345 159441 Intron RF00475 snosnR69 25S: Cm3322 KC353090
TRnc_1366 215 supercont2.14 179253 179467 3′UTR RF01152 sR1   KC353091
TRnc_1449 234 supercont2.17 97081 97314 5′UTR RF01191 SNORD121A 18S: Cm673, Gm234 KC353101
TRnc_1560 77 supercont2.2 546818 546894 3′UTR RF01139 sR2   KC353110
TRnc_1603 358 supercont2.2 766347 766704 3′UTR RF00345 snoR1   KC353115
TRnc_1709 154 supercont2.2 1400380 1400533 5′UTR RF01193 snoR20a   KC353124
TRnc_1825 309 supercont2.2 1958330 1958022 3′UTR    25S: Um2301; Um769 KC353137
TRnc_1841 143 supercont2.2 2090171 2090313 3′UTR RF01144 sR17   KC353138
TRnc_2011 127 supercont2.3 74633 74759 3′UTR RF00441 snoZ242   KC353147
TRnc_2018 306 supercont2.3 117035 116730 3′UTR    18S: Um628 KC353149
TRnc_2027 96 supercont2.3 166668 166763 Intron RF01281 snoR35   KC353150
TRnc_2179 431 supercont2.3 961995 961565 Intergenic    25S: Um413 KC353160
TRnc_2265 87 supercont2.3 1276133 1276219 Intron RF01197 snR39 25S: Gm808 KC353164
TRnc_2283 233 supercont2.3 1301587 1301819 5′UTR    18S: Am1105; 25S: Am499, Am1453 KC353165
TRnc_2405 317 supercont2.3 1975149 1975465 3′UTR    25S: Gm1738 KC353175
TRnc_2419 204 supercont2.3 2045771 2045974 5′UTR RF01125 sR4 18S: Am350, Gm698, Cm701;25S: Gm215, Cm3127 KC353177
TRnc_2421 182 supercont2.3 2046135 2046316 5′UTR RF00016 SNORD14, U14 18S: Um50, Cm379;25S: Cm2352 KC353178
TRnc_2498 172 supercont2.3 2451919 2452090 5′UTR RF00527    KC353188
TRnc_2545 119 supercont2.3 2657688 2657806 3′UTR RF01188 snR56 18S: Gm1389,Am385 KC353195
TRnc_2569 192 supercont2.3 2759920 2759729 Intron RF01297 sR40   KC353197
TRnc_2594 143 supercont2.3 2859175 2859033 Intron RF01305 sR51   KC353199
TRnc_2691 158 supercont2.4 233433 233276 Intergenic    5.8S: Gm87 KC353216
TRnc_2782 128 supercont2.4 669565 669438 5′UTR RF00630 P26 18S: Cm534; 25S: Cm1583, Cm1196, Cm3233 KC353223
TRnc_2936 246 supercont2.4 1403883 1403638 Intron RF00312 snoZ206 25S: Gm1378 KC353235
TRnc_3227 139 supercont2.5 625518 625380 Intron RF00594 SNORD86, U86 KC353256
TRnc_3297 138 supercont2.5 896392 896529 3′UTR RF00610 SNORD110 KC353262
TRnc_338 135 supercont2.1 1643180 1643314 Intron RF01223 snR13 25S: Am2267 KC353022
TRnc_3425 202 supercont2.6 22581 22782 3′UTR    25S: Gm911 KC353267
TRnc_3426 98 supercont2.6 23000 23097 3′UTR     KC353268
TRnc_3438 173 supercont2.6 91295 91467 5′UTR RF01291 snoU97, SNORD97 KC353269
TRnc_3573 95 supercont2.6 964586 964680 Intron RF00530 snoMe28S-Cm2645 25S: Cm2324, Um2867; U2: Um43 KC353276
TRnc_3654 191 supercont2.7 14823 15013 3′UTR RF01140 sR20 18S: Gm832 KC353284
TRnc_3667 191 supercont2.7 59063 59253 3′UTR RF00529 snoMe28S-Am2589 KC353285
TRnc_3778 101 supercont2.7 777627 777727 5′UTR RF00471 snosnR48, snr46 18S: Am721; 25S: Gm2780; Am2243 KC353293
TRnc_3833 109 supercont2.7 1124537 1124429 3′UTR RF01273 sR34   KC353299
TRnc_3855 288 supercont2.7 1281447 1281734 Intron RF01127 sR42   KC353305
TRnc_3911 80 supercont2.8 194694 194773 Intron RF00213 snoR38 25S: Gm2799 KC353308
TRnc_4113 681 supercont2.8 1152047 1152727 Intron RF01274 sR45 25S: Cm1856,Cm1673; 18S: Am833; U2: Am155 KC353324
TRnc_415 103 supercont2.1 1918108 1918210 Intron RF01121 Sr38   KC353027
TRnc_4250 192 supercont2.9 658585 658394 3′UTR    18S: Cm373 KC353339
TRnc_4259 104 supercont2.9 693331 693434 5′UTR RF00276 SNORD52, U52 25S: Um2408 KC353340
TRnc_4260 95 supercont2.9 695194 695288 Intergenic RF01178 snoR77Y,snR77 18S: Um565, Am564 KC353341
TRnc_4261 138 supercont2.9 695445 695582 Intergenic RF01209 snR76 18S: Cm1674;25S: Cm2184, Am2266, Cm3294, Cm1758 KC353342
TRnc_4262 273 supercont2.9 695588 695860 Intergenic RF01185 snR75, U15 25S: Gm2275 KC353343
TRnc_4263 157 supercont2.9 695917 696073 Intergenic RF00086 SNORD27, U27, snR74 25S: Cm1179 KC353344
TRnc_4264 88 supercont2.9 696179 696266 5′UTR RF01207 snR73,U35 25S: Cm3333 KC353345
TRnc_4267 100 supercont2.9 703004 703103 3′UTR    18S: Um525, Gm527 KC353346
TRnc_4316 97 supercont2.9 861468 861372 5′UTR RF01223 snR13   KC353347
TRnc_4336 162 supercont2.9 996654 996493 Intron    18S: Gm1089 KC353348
TRnc_608 234 supercont2.1 2701229 2701462 3′UTR RF01202 sn2991 5.8S: Cm137 KC353041
TRnc_640 129 supercont2.1 2869815 2869687 3′UTR RF00300 snoZ221   KC353043
TRnc_801 488 supercont2.1 3681448 3681935 3′UTR RF00012 U3 18S: Um418; 25S: Cm1363, Cm1633, Cm1983, Cm3165; U1: Cm45 KC353053
TRnc_821 210 supercont2.1 3768831 3768622 Intergenic    18S: Cm1301,25S: Cm880 KC353055
TRnc_985 153 supercont2.10 686423 686575 Intron RF00494 snoU2_19   KC353066
  1. Name: the C/D box snoRNAs were numbered according to the order of identification. Lena: the cDNA length of the snoRNA. Homologues: homologues in Rfam or other organisms. Accession1 is the accession number in Rfam; Accession2 is the accession number in GenBank; Genes are homologous gene names in other organisms [1922]. Putative target(s): the predicted modified nucleotides within rRNAs or snRNAs using the Snoscan package.