Table 2 C/D box snoRNA candidates identified in T. rubrum

TRnc_1010

87

supercont2.10

749220

749306

3′UTR

RF00477

snosnR66

KC353070

TRnc_1157

95

supercont2.11

539262

539356

Intron

RF00093

SNORD18, U18

25S: Am651, Gm654; 18S: Am1159

KC353075

TRnc_1271

242

supercont2.12

280437

280196

Intron

RF01152

sR1

25S: Am2268, Am3277,Cm964,Cm961;U5: Cm103; 18S: Am1540

KC353083

TRnc_1272

265

supercont2.12

280712

280448

Intron

RF01152

sR1

25S: Cm964, Cm961;18S: Um604; U5: Cm103

KC353084

TRnc_1299

109

supercont2.13

24837

24729

Intron

RF00593

snoU83B

KC353086

TRnc_1359

97

supercont2.14

159345

159441

Intron

RF00475

snosnR69

25S: Cm3322

KC353090

TRnc_1366

215

supercont2.14

179253

179467

3′UTR

RF01152

sR1

KC353091

TRnc_1449

234

supercont2.17

97081

97314

5′UTR

RF01191

SNORD121A

18S: Cm673, Gm234

KC353101

TRnc_1560

77

supercont2.2

546818

546894

3′UTR

RF01139

sR2

KC353110

TRnc_1603

358

supercont2.2

766347

766704

3′UTR

RF00345

snoR1

KC353115

TRnc_1709

154

supercont2.2

1400380

1400533

5′UTR

RF01193

snoR20a

KC353124

TRnc_1825

309

supercont2.2

1958330

1958022

3′UTR

25S: Um2301; Um769

KC353137

TRnc_1841

143

supercont2.2

2090171

2090313

3′UTR

RF01144

sR17

KC353138

TRnc_2011

127

supercont2.3

74633

74759

3′UTR

RF00441

snoZ242

KC353147

TRnc_2018

306

supercont2.3

117035

116730

3′UTR

18S: Um628

KC353149

TRnc_2027

96

supercont2.3

166668

166763

Intron

RF01281

snoR35

KC353150

TRnc_2179

431

supercont2.3

961995

961565

Intergenic

25S: Um413

KC353160

TRnc_2265

87

supercont2.3

1276133

1276219

Intron

RF01197

snR39

25S: Gm808

KC353164

TRnc_2283

233

supercont2.3

1301587

1301819

5′UTR

18S: Am1105; 25S: Am499, Am1453

KC353165

TRnc_2405

317

supercont2.3

1975149

1975465

3′UTR

25S: Gm1738

KC353175

TRnc_2419

204

supercont2.3

2045771

2045974

5′UTR

RF01125

sR4

18S: Am350, Gm698, Cm701;25S: Gm215, Cm3127

KC353177

TRnc_2421

182

supercont2.3

2046135

2046316

5′UTR

RF00016

SNORD14, U14

18S: Um50, Cm379;25S: Cm2352

KC353178

TRnc_2498

172

supercont2.3

2451919

2452090

5′UTR

RF00527

KC353188

TRnc_2545

119

supercont2.3

2657688

2657806

3′UTR

RF01188

snR56

18S: Gm1389,Am385

KC353195

TRnc_2569

192

supercont2.3

2759920

2759729

Intron

RF01297

sR40

KC353197

TRnc_2594

143

supercont2.3

2859175

2859033

Intron

RF01305

sR51

KC353199

TRnc_2691

158

supercont2.4

233433

233276

Intergenic

5.8S: Gm87

KC353216

TRnc_2782

128

supercont2.4

669565

669438

5′UTR

RF00630

P26

18S: Cm534; 25S: Cm1583, Cm1196, Cm3233

KC353223

TRnc_2936

246

supercont2.4

1403883

1403638

Intron

RF00312

snoZ206

25S: Gm1378

KC353235

TRnc_3227

139

supercont2.5

625518

625380

Intron

RF00594

SNORD86, U86

KC353256

TRnc_3297

138

supercont2.5

896392

896529

3′UTR

RF00610

SNORD110

KC353262

TRnc_338

135

supercont2.1

1643180

1643314

Intron

RF01223

snR13

25S: Am2267

KC353022

TRnc_3425

202

supercont2.6

22581

22782

3′UTR

25S: Gm911

KC353267

TRnc_3426

98

supercont2.6

23000

23097

3′UTR

KC353268

TRnc_3438

173

supercont2.6

91295

91467

5′UTR

RF01291

snoU97, SNORD97

KC353269

TRnc_3573

95

supercont2.6

964586

964680

Intron

RF00530

snoMe28S-Cm2645

25S: Cm2324, Um2867; U2: Um43

KC353276

TRnc_3654

191

supercont2.7

14823

15013

3′UTR

RF01140

sR20

18S: Gm832

KC353284

TRnc_3667

191

supercont2.7

59063

59253

3′UTR

RF00529

snoMe28S-Am2589

KC353285

TRnc_3778

101

supercont2.7

777627

777727

5′UTR

RF00471

snosnR48, snr46

18S: Am721; 25S: Gm2780; Am2243

KC353293

TRnc_3833

109

supercont2.7

1124537

1124429

3′UTR

RF01273

sR34

KC353299

TRnc_3855

288

supercont2.7

1281447

1281734

Intron

RF01127

sR42

KC353305

TRnc_3911

80

supercont2.8

194694

194773

Intron

RF00213

snoR38

25S: Gm2799

KC353308

TRnc_4113

681

supercont2.8

1152047

1152727

Intron

RF01274

sR45

25S: Cm1856,Cm1673; 18S: Am833; U2: Am155

KC353324

TRnc_415

103

supercont2.1

1918108

1918210

Intron

RF01121

Sr38

KC353027

TRnc_4250

192

supercont2.9

658585

658394

3′UTR

18S: Cm373

KC353339

TRnc_4259

104

supercont2.9

693331

693434

5′UTR

RF00276

SNORD52, U52

25S: Um2408

KC353340

TRnc_4260

95

supercont2.9

695194

695288

Intergenic

RF01178

snoR77Y,snR77

18S: Um565, Am564

KC353341

TRnc_4261

138

supercont2.9

695445

695582

Intergenic

RF01209

snR76

18S: Cm1674;25S: Cm2184, Am2266, Cm3294, Cm1758

KC353342

TRnc_4262

273

supercont2.9

695588

695860

Intergenic

RF01185

snR75, U15

25S: Gm2275

KC353343

TRnc_4263

157

supercont2.9

695917

696073

Intergenic

RF00086

SNORD27, U27, snR74

25S: Cm1179

KC353344

TRnc_4264

88

supercont2.9

696179

696266

5′UTR

RF01207

snR73,U35

25S: Cm3333

KC353345

TRnc_4267

100

supercont2.9

703004

703103

3′UTR

18S: Um525, Gm527

KC353346

TRnc_4316

97

supercont2.9

861468

861372

5′UTR

RF01223

snR13

KC353347

TRnc_4336

162

supercont2.9

996654

996493

Intron

18S: Gm1089

KC353348

TRnc_608

234

supercont2.1

2701229

2701462

3′UTR

RF01202

sn2991

5.8S: Cm137

KC353041

TRnc_640

129

supercont2.1

2869815

2869687

3′UTR

RF00300

snoZ221

KC353043

TRnc_801

488

supercont2.1

3681448

3681935

3′UTR

RF00012

U3

18S: Um418; 25S: Cm1363, Cm1633, Cm1983, Cm3165; U1: Cm45

KC353053

TRnc_821

210

supercont2.1

3768831

3768622

Intergenic

18S: Cm1301,25S: Cm880

KC353055

TRnc_985

153

supercont2.10

686423

686575

Intron

RF00494

snoU2_19

KC353066