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Table 3 H/ACA box snoRNA candidates identified in T. rubrum

From: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum

   Genome location Homologues   
Name Lena Chromosome Start End Position Accession1 Genes Putative target Accession2
Trnc_1355 371 supercont2.14 142837 142467 5′UTR    18S-Ψ1434 KC353088
Trnc_1370 133 supercont2.14 187697 187565 5′UTR RF01134 sR30   KC353092
Trnc_203 308 supercont2.1 996485 996178 5′UTR    18S-Ψ803 KC353013
Trnc_2045 228 supercont2.3 296293 296520 5′UTR    25S-Ψ2867,18S-Ψ489 KC353151
Trnc_2579 349 supercont2.3 2792710 2793058 5′UTR    18S-Ψ611 KC353198
Trnc_2999 290 supercont2.4 1720998 1721287 5′UTR    25S-Ψ2135 KC353240
Trnc_3005 214 supercont2.4 1748930 1749143 5′UTR    25S-Ψ1081 KC353241
Trnc_3218 332 supercont2.5 584674 585005 5′UTR    18S-Ψ573,25S-Ψ681,25S-Ψ2635 KC353255
Trnc_3509 433 supercont2.6 608530 608098 5′UTR    25S-Ψ2545,25S-Ψ1671 KC353274
Trnc_5 289 supercont2.1 19982 20270 5′UTR    25S-Ψ2329 KC352999
Trnc_910 468 supercont2.10 343107 343574 5′UTR    18S-Ψ12 KC353060
Trnc_1407 234 supercont2.16 54707 54474 3′UTR    25S-Ψ1155 KC353095
Trnc_1472 188 supercont2.2 69663 69850 3′UTR RF01258 snR10   KC353105
Trnc_1776 326 supercont2.2 1789188 1788863 3′UTR RF01231 snoR74 18S-Ψ1593,18S-Ψ412 KC353129
Trnc_1893 344 supercont2.2 2393882 2393539 3′UTR    25S-Ψ312 KC353142
Trnc_2452 323 supercont2.3 2170039 2169717 3′UTR    25S-Ψ2650 KC353184
Trnc_2596 324 supercont2.3 2882125 2881802 3′UTR    18S-Ψ1336 KC353200
Trnc_2843 225 supercont2.4 976176 976400 3′UTR RF01251 snR3 25S-Ψ2120,25S-Ψ2251 KC353227
Trnc_3023 182 supercont2.4 1839416 1839597 3′UTR    25S-Ψ759,25S-Ψ1558,25S-Ψ520 KC353242
Trnc_3387 226 supercont2.5 1472165 1472390 3′UTR    18S-Ψ565,25S-Ψ2404 KC353265
Trnc_3741 180 supercont2.7 491853 492032 3′UTR RF01247 snR32   KC353292
Trnc_4007 239 supercont2.8 722404 722166 3′UTR    18S-Ψ1344 KC353317
Trnc_64 306 supercont2.1 267027 267332 3′UTR    25S-Ψ2714 KC353002
Trnc_817 188 supercont2.1 3719705 3719892 3′UTR    18S-Ψ267,18S-Ψ1697 KC353054
Trnc_920 310 supercont2.10 389299 389608 3′UTR    25S-Ψ116,18S-Ψ1213 KC353061
Trnc_1698 360 supercont2.2 1345609 1345968 Intron    18S-Ψ1026 KC353122
Trnc_2075 96 supercont2.3 425677 425772 Intron RF00405 SNORA44   KC353153
Trnc_2172 126 supercont2.3 922150 922025 Intron RF00406 SNORA42   KC353159
Trnc_2443 106 supercont2.3 2090244 2090349 Intron RF00428 SNORA38   KC353182
Trnc_2531 75 supercont2.3 2617075 2617001 Intron RF00415 SNORA30   KC353194
Trnc_2606 280 supercont2.36 2106 2385 Intergenic    25S-Ψ1054 KC353202
Trnc_2618 322 supercont2.36 8062 8383 Intergenic    25S-Ψ1062 KC353205
Trnc_2621 406 supercont2.36 8934 9339 Intergenic    25S-Ψ1689 KC353206
Trnc_2636 203 supercont2.36 19276 19478 Intergenic    18S-Ψ217,25S-Ψ1890 KC353210
Trnc_2898 393 supercont2.4 1199167 1198775 Intron    25S-Ψ1718,25S-Ψ36 KC353231
Trnc_3585 281 supercont2.6 1065274 1064994 Intron    18S-Ψ867,25S-Ψ111 KC353278
Trnc_4006 251 supercont2.8 710950 711200 Intron RF01263 snR191 18S-Ψ935,25S-Ψ1239,25-Ψ2245 KC353316
  1. Name: the H/ACA box snoRNAs were numbered according to the order of identification. Lena: the cDNA length of the snoRNA. Homologues: homologues in Rfam or other organisms. Accession1 is the accession number in Rfam; Accession2 is the accession number in GenBank; Genes are homologous gene names in other organisms [1922]. Putative target(s): the predicted modified nucleotides within rRNAs using SnoGPS package.