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Table 3 H/ACA box snoRNA candidates identified in T. rubrum

From: Identification and characterisation of non-coding small RNAs in the pathogenic filamentous fungus Trichophyton rubrum

  

Genome location

Homologues

  

Name

Lena

Chromosome

Start

End

Position

Accession1

Genes

Putative target

Accession2

Trnc_1355

371

supercont2.14

142837

142467

5′UTR

  

18S-Ψ1434

KC353088

Trnc_1370

133

supercont2.14

187697

187565

5′UTR

RF01134

sR30

 

KC353092

Trnc_203

308

supercont2.1

996485

996178

5′UTR

  

18S-Ψ803

KC353013

Trnc_2045

228

supercont2.3

296293

296520

5′UTR

  

25S-Ψ2867,18S-Ψ489

KC353151

Trnc_2579

349

supercont2.3

2792710

2793058

5′UTR

  

18S-Ψ611

KC353198

Trnc_2999

290

supercont2.4

1720998

1721287

5′UTR

  

25S-Ψ2135

KC353240

Trnc_3005

214

supercont2.4

1748930

1749143

5′UTR

  

25S-Ψ1081

KC353241

Trnc_3218

332

supercont2.5

584674

585005

5′UTR

  

18S-Ψ573,25S-Ψ681,25S-Ψ2635

KC353255

Trnc_3509

433

supercont2.6

608530

608098

5′UTR

  

25S-Ψ2545,25S-Ψ1671

KC353274

Trnc_5

289

supercont2.1

19982

20270

5′UTR

  

25S-Ψ2329

KC352999

Trnc_910

468

supercont2.10

343107

343574

5′UTR

  

18S-Ψ12

KC353060

Trnc_1407

234

supercont2.16

54707

54474

3′UTR

  

25S-Ψ1155

KC353095

Trnc_1472

188

supercont2.2

69663

69850

3′UTR

RF01258

snR10

 

KC353105

Trnc_1776

326

supercont2.2

1789188

1788863

3′UTR

RF01231

snoR74

18S-Ψ1593,18S-Ψ412

KC353129

Trnc_1893

344

supercont2.2

2393882

2393539

3′UTR

  

25S-Ψ312

KC353142

Trnc_2452

323

supercont2.3

2170039

2169717

3′UTR

  

25S-Ψ2650

KC353184

Trnc_2596

324

supercont2.3

2882125

2881802

3′UTR

  

18S-Ψ1336

KC353200

Trnc_2843

225

supercont2.4

976176

976400

3′UTR

RF01251

snR3

25S-Ψ2120,25S-Ψ2251

KC353227

Trnc_3023

182

supercont2.4

1839416

1839597

3′UTR

  

25S-Ψ759,25S-Ψ1558,25S-Ψ520

KC353242

Trnc_3387

226

supercont2.5

1472165

1472390

3′UTR

  

18S-Ψ565,25S-Ψ2404

KC353265

Trnc_3741

180

supercont2.7

491853

492032

3′UTR

RF01247

snR32

 

KC353292

Trnc_4007

239

supercont2.8

722404

722166

3′UTR

  

18S-Ψ1344

KC353317

Trnc_64

306

supercont2.1

267027

267332

3′UTR

  

25S-Ψ2714

KC353002

Trnc_817

188

supercont2.1

3719705

3719892

3′UTR

  

18S-Ψ267,18S-Ψ1697

KC353054

Trnc_920

310

supercont2.10

389299

389608

3′UTR

  

25S-Ψ116,18S-Ψ1213

KC353061

Trnc_1698

360

supercont2.2

1345609

1345968

Intron

  

18S-Ψ1026

KC353122

Trnc_2075

96

supercont2.3

425677

425772

Intron

RF00405

SNORA44

 

KC353153

Trnc_2172

126

supercont2.3

922150

922025

Intron

RF00406

SNORA42

 

KC353159

Trnc_2443

106

supercont2.3

2090244

2090349

Intron

RF00428

SNORA38

 

KC353182

Trnc_2531

75

supercont2.3

2617075

2617001

Intron

RF00415

SNORA30

 

KC353194

Trnc_2606

280

supercont2.36

2106

2385

Intergenic

  

25S-Ψ1054

KC353202

Trnc_2618

322

supercont2.36

8062

8383

Intergenic

  

25S-Ψ1062

KC353205

Trnc_2621

406

supercont2.36

8934

9339

Intergenic

  

25S-Ψ1689

KC353206

Trnc_2636

203

supercont2.36

19276

19478

Intergenic

  

18S-Ψ217,25S-Ψ1890

KC353210

Trnc_2898

393

supercont2.4

1199167

1198775

Intron

  

25S-Ψ1718,25S-Ψ36

KC353231

Trnc_3585

281

supercont2.6

1065274

1064994

Intron

  

18S-Ψ867,25S-Ψ111

KC353278

Trnc_4006

251

supercont2.8

710950

711200

Intron

RF01263

snR191

18S-Ψ935,25S-Ψ1239,25-Ψ2245

KC353316

  1. Name: the H/ACA box snoRNAs were numbered according to the order of identification. Lena: the cDNA length of the snoRNA. Homologues: homologues in Rfam or other organisms. Accession1 is the accession number in Rfam; Accession2 is the accession number in GenBank; Genes are homologous gene names in other organisms [19–22]. Putative target(s): the predicted modified nucleotides within rRNAs using SnoGPS package.