Table 1 Categorization and abundance of tags
Summary | Â | F-1 | F-2 | F-3 | S-1 | S-2 | S-3 |
|---|---|---|---|---|---|---|---|
Raw data | Total | 6057743 | 6106800 | 5907794 | 5926547 | 5891017 | 6042253 |
| Â | Distinct tags | 466231 | 457518 | 389247 | 252111 | 421049 | 345292 |
Clean tags | Total number | 5766711 | 5928700 | 5696273 | 5849242 | 5661517 | 5871546 |
| Â | Distinct tag numbers | 195469 | 282106 | 180025 | 181205 | 209697 | 177594 |
All tag mapping to gene | Total number | 4418440 | 4590068 | 4300473 | 4207316 | 4201776 | 4060397 |
| Â | Total % of clean tags | 76.62% | 77.42% | 75.50% | 71.93% | 74.22% | 69.15% |
| Â | Distinct tag numbers | 106159 | 163814 | 105324 | 79790 | 105946 | 92188 |
| Â | Distinct tag % of clean tags | 54.31% | 58.07% | 58.51% | 44.03% | 50.52% | 51.91% |
Unambiguous Tag mapping to gene | Total number | 2216772 | 2193183 | 2227360 | 1948213 | 2138430 | 2192477 |
| Â | Total % of clean tags | 38.44% | 36.99% | 39.10% | 33.31% | 37.77% | 37.34% |
| Â | Distinct tag numbers | 72551 | 111516 | 71585 | 51219 | 72232 | 63400 |
| Â | Distinct Tag % of clean tags | 37.12% | 39.53% | 39.76% | 28.27% | 34.45% | 35.70% |
All tag-mapped genes | Number | 66081 | 77376 | 66172 | 56741 | 67267 | 62364 |
| Â | % of ref genes | 56.71% | 66.41% | 56.79% | 48.70% | 57.73% | 53.52% |
Unambiguous tag-mapped genes | Number | 34451 | 42940 | 33937 | 26642 | 35072 | 31397 |
| Â | % of ref genes | 29.57% | 36.85% | 29.13% | 22.86% | 30.10% | 26.95% |
Unknown tags | Total number | 1348271 | 1338632 | 1395800 | 1641926 | 1459741 | 1811149 |
| Â | Total % of clean tags | 23.38% | 22.58% | 24.50% | 28.07% | 25.78% | 30.85% |
| Â | Distinct tag numbers | 89310 | 118292 | 74701 | 101415 | 103751 | 85406 |
| Â | Distinct tag % of clean tags | 45.69% | 41.93% | 41.49% | 55.97% | 49.48% | 48.09% |