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Figure 5 | BMC Genomics

Figure 5

From: A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing

Figure 5

Comparison of T to C conversion ratio between 8-14 mer and 1-7mer target sites in the Hafner et al. PAR-CLIP sequencing data. C: C onserved, N: N onserved, 7: 7 mer seed matching, 8: 8 mer seed matching. For example: The CN78 group consists of miRNA target sites within Conserved, Nonconserved UTRs with both 7mer and 8mer matching. In panel J to R, we used only top 102 expressed miRNAs (from Hefner et al.) to calculate the ratios. (A) All miRNAs (B) top 102 expressed miRNAs. Astric marks indicates significant differnece between position 8-14 and 1-7 (p value < 0.05).

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