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Table 1 Additional information sources.

From: Improved moderation for gene-wise variance estimation in RNA-Seq via the exploitation of external information

Species

Tissue

Replicates

Platform

Source

GEO accession

 

Liver

6

   
 

Spleen

6

   

C57BL/6J mouse

Thymus

6

RNA-Seq

Keane et al. (2011) [25]

GSE30617

 

Lung

6

   
 

Heart

6

   
 

Hippocampus

6

   

C57BL/6J mouse

Striatum

4

RNA-Seq

Polymenidou et al. (2011) [27]

GSE27218

C57BL/6J mouse

Striatum

10

microarray

Bottomly et al. (2011) [17]

GSE26024

  1. Variance estimates from these three datasets are be used to improve the estimation of the common variance function in the main analysis dataset.
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BMC Genomics

ISSN: 1471-2164

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