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Table 7 MYH3 and DHODH rankings using different null models.

From: Identifying Mendelian disease genes with the Variant Effect Scoring Tool

Gene

FisherRank

FisherP

FisherBHFDR

StoufferRank

StoufferP

StoufferBHFDR

Swissprot null model

      

DHODH

4

3.8e-05

0.05

2

0.001

1.00

MYH3

5

1.7e-05

0.05

4

0.021

1.00

1000 genomes null model

      

DHODH

5

4.4e-08

0.05

2

1.9e-06

0.05

MYH3

3

3.8e-14

0.05

2

9.3e-07

0.05

Complete genomics null model

      

DHODH

5

4.6e-08

0.05

2

1.9e-06

0.05

MYH3

15

2.0e-06

0.05

5

2.4e-03

1.00

  1. Ranks of MYH3 and DHODH differ slightly when different null models are used to estimate p-values for VEST mutation scores.