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Table 2 Performance of the different methods on the SAP-SEQ dataset

From: WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

Method

Qtot

P[D]

S[D]

P[N]

S[N]

MCC

AUC

PhD-SNP

0.76

0.77

0.75

0.76

0.78

0.52

0.83

SNPs&GO

0.81

0.82

0.79

0.80

0.82

0.61

0.88

  1. D=disease related, N=neutral. For index definition see "Measures of performance".
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BMC Genomics

ISSN: 1471-2164

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