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Table 4 The AUC performance comparison of MHC2SKpan with MutliRTA, TEPITOPEpan, NetMHCIIpan-1.0 and NetMHCIIpan-2.0 on EpanSet4. For each allele, we display the largest value in boldface. The last row is the average result by excluding two alleles in NielsenSet3, DRB1*03:02 and DRB1*12:01.

From: MHC2SKpan: a novel kernel based approach for pan-specific MHC class II peptide binding prediction

allele count MultiRTA TEPITOPEpan NetMHCIIpan-1.0 NetMHCIIpan-2.0 MHC2SKpan
DRB1*01:02 92 0.749 0.758 0.785 0.746 0.752
DRB1*01:03 52 0.772 0.867 0.756 0.772 0.798
DRB1*03:02 88 0.733 0.823 0.775 0.840 0.761
DRB1*04:03 63 0.611 0.762 0.659 0.678 0.714
DRB1*04:06 92 0.519 0.501 0.557 0.486 0.489
DRB1*11:02 65 0.591 0.738 0.738 0.774 0.766
DRB1*11:03 64 0.585 0.726 0.623 0.791 0.785
DRB1*11:04 73 0.618 0.654 0.639 0.737 0.740
DRB1*12:01 719 0.673 0.659 0.721 0.740 0.753
DRB1*13:01 302 0.567 0.623 0.516 0.494 0.485
DRB1*14:01 43 0.809 0.785 0.761 0.676 0.721
DRB1*15:02 47 0.777 0.742 0.762 0.888 0.899
DRB1*16:01 56 0.789 0.644 0.793 0.814 0.817
DRB3*02:02 656 0.680 0.686 0.732 0.806 0.789
Average 2412 0.677 0.712 0.701 0.732 0.734
Average* 1605 0.672 0.707 0.693 0.722 0.730