Table 1 Details of sequence reads of 'Shotgun-SOLiD' dataset.
Data type (shotgun sample) | File consisting forward reads | File consisting reverse reads |
|---|---|---|
Fasta file after quality filter | 10,764,512 | 9,997,372 |
Reads of length 40+ bp | 3,168,307 | 4,577,127 |
Reads where both the mates are 40+bp | 791,321 | 791,321 |
Mates where one read is 40+bp other is <40bp | 861,344 forward (40+bp) reads has <40bp reverse mates | 1,798,245 reverse (40+bp) reads has <40bp forward mates |
Total number of reads processed for BLAST | 3,450,910 | 3,450,910 |