Skip to main content

Table 1 Cell type specific co-occurring cofactor motifs.

From: Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data

Cell type

Co-occurring motifs (Jaspar and Uniprobe Motif ID)

Total

H1-hESC

MA0105.1, MA0145.1, MA0364.1, MA0375.1, MA0395.1, Zic1 secondary, Zic2 secondary, MA0154.1, MA0355.1, MA0364.1, Tcfap2b primary, Zic3 secondary

12

HeLa-S3

MA0145.1, MA0205.1, MA0375.1, MA0395.1, Zic2 secondary, Jundm2 secondary, MA0099.1, MA0272.1, MA0303.1

9

HepG2

MA0114.1, MA0017.1, MA0114.1

3

K562

MA0375.1, MA0395.1

2

  1. Listed in the table are motifs found consistently enriched within ChIP-seq peaks investigating a particular cell type independent of the TF targeted by the ChIP process.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us