Gene expression analysis of induced pluripotent stem cells from aneuploid chromosomal syndromes

BMC Genomics

Table 1 Statistical information of RNA-seq mapping result.

A. Number of reads in each cell line
Sample	Total reads	Total Mapped	Percent	Unique Mapped	Percent
UMC1	59,478,926	19,119,147	32.14%	14,256,083	23.97%
UMC6	58,161,509	26,559,086	45.66%	19,416,912	33.38%
T8	86,659,524	46,672,781	53.86%	36,393,943	42.00%
T13	90,676,957	49,763,484	54.88%	38,656,136	42.63%
T22	83,120,658	49,582,084	59.65%	38,498,635	46.32%
XO	88,052,908	46,906,900	53.27%	36,512,405	41.47%
B. Gene expression levels. More than 80% genes are moderately expressed.
Expression Level (RPKM)	UMC1	UMC6	T8	T13	T22	XO
Low 0.3-1	1755	1762	1817	1831	1933	1850
Medium 1-100	11350	11270	11548	11534	11041	11060
High > 100	299	331	281	255	250	295
Total	13404	13363	13646	13620	13224	13205

A. Number of reads (total reads, mapped reads and unique mapped reads) shows in every cell lines. B. Distribution of all expressed genes among different expression levels. More than 80% genes are medium expressed.

ISSN: 1471-2164