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Table 1 Percent of primary and secondary peaks compared to noise if a percentage of the highest intensity peaks are kept

From: Filtering of MS/MS data for peptide identification

Data Set

Percent Kept

Binghamton

Omics A

Omics B

Peaks Data

Pepnovo Data

Top 100%

1.23

16.34

17.37

0.73

17.64

Top 90%

4.77

17.58

18.65

2.71

18.92

Top 70%

4.77

20.00

21.45

2.71

22.32

Top 50%

4.77

23.19

25.69

2.71

27.76

Top 30%

4.90

31.45

33.40

3.07

38.35

Top 10%

6.97

49.00

50.87

5.88

66.48