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Figure 4 | BMC Genomics

Figure 4

From: QChIPat: a quantitative method to identify distinct binding patterns for two biological ChIP-seq samples in different experimental conditions

Figure 4

Flowchart of QChIPat and an example. (A) The flowchart of QChIPat depicts the steps to identify distinct binding patterns for two ChIP-seq samples. (B) This figure shows the comparison between two ChIP-seq samples: ESC H3K36me3 and NPC H3K36me3. The top subfigure displays two ESC "Only" H3K36me3 peaks compared zero NPC H3K36me3 peaks. The bottom subfigure shows an NPC "Shift/Unchanged" H36Kme3 peak compared with two ESC H3K36me3 peaks: one "Shift" (left) and the other "Unchanged" (right). The NPC H3K36me3 peak is labelled "Shift/Unchanged" because it corresponds both as a "Shift" peak in comparison with the left-hand ESC H3K36me3 peak and as an "Unchanged' peak in comparison with the right-hand ESC H3K36me3 peak.

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BMC Genomics

ISSN: 1471-2164

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