Table 3 Performance of the functional prediction from de novo transcriptomic assembly using different E–value thresholds
From: Predicting the functional repertoire of an organism from unassembled RNA–seq data
E-value cutoff | FPR | TPR | PPV | F1 |
|---|---|---|---|---|
10 | 89.63 | 95.69 | 20.16 | 33.30 |
1e-1 | 50.86 | 95.69 | 30.79 | 46.59 |
1e-5 | 35.67 | 95.59 | 38.79 | 55.19 |
1e-10 | 26.62 | 95.49 | 45.89 | 61.99 |
1e-25 | 15.24 | 94.31 | 59.41 | 72.90 |
1e-50 | 08.33 | 89.44 | 71.74 | 79.62 |
1e-75 | 04.59 | 80.43 | 80.56 | 80.49 |
1e-100 | 02.95 | 72.52 | 85.31 | 78.40 |