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Table 2 Repetitive sequences and their proportions in C. lacryma-jobi and C. aquatica HG

From: Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping

Proportion in two genomes (%)
Repeat family C. lacryma-jobi C. aquatica
Retrotransposon 69.08 63.83
 Ty1/Copia 39.57 31.12
 Ty3/Gypsy 29.11 32.56
 Unclassified LTR 0.28 0.12
 LINE/SINE 0.12 0.03
Transposon 4.38 3.30
 hAT 0.03 0.06
 Mutator 0.57 0.37
 RC/Helitron 0.02 0.04
 En-Spm 3.64 2.42
 PIF-Harbinger 0.09 0.24
 Tc1-Mariner 0.01 0.14
 Other 0.02 0.03
rDNA 0.43 0.56
snRNA ND ND
Satellite 0.60 4.89
Unclassified 1.05 0.30
Total 75.54 72.88
  1. Note: snRNA, small noncoding RNA; ND, not detected.