Skip to main content

Table 1 Mapping results of RNA-Seq reads of HHZ, P28 and H471 under 1d and 3d drought stress and control conditions

From: Comparative transcriptome sequencing of tolerant rice introgression line and its parents in response to drought stress

Samples

Total filtered pair-end reads

Total mapped reads (%)

Unique mapped reads (%)

Total mapped genes

HHZ-ck 1

2 × 8,894,670

14,403,823 (81.4)

13,766,465 (77.8)

23129

HHZ-ck 2

2 × 9,326,860

15,241,546 (81.8)

14,547,450 (78.0)

P28-ck 1

2 × 10,384,097

16,978,445 (81.9)

16,233,203 (78.3)

23693

P28-ck 2

2 × 10,326,754

16,811,305 (81.4)

16,047,198 (77.7)

H471-ck 1

2 × 10,068,639

16,551,528 (82.2)

15,823,734 (78.6)

23625

H471-ck 2

2 × 10,083,264

16,585,631 (82.3)

15,852,617 (78.6)

HHZ-1d 1

2 × 11,727,199

19,581,596 (83.5)

18,660,210 (79.6)

23078

HHZ-1d 2

2 × 9,958,934

16,628,254 (83.5)

15,864,006 (79.7)

P28-1d 1

2 × 11,594,160

19,305,500 (83.3)

18,463,197 (79.7)

22774

P28-1d 2

2 × 10,484,144

17,435,333 (83.2)

16,669,090 (79.6)

H471-1d 1

2 × 9,853,652

16,126,140 (81.9)

15,390,608 (78.1)

23320

H471-1d 2

2 × 10,868,092

17,847,671 (82.2)

17,055,619 (78.5)

HHZ-3d 1

2 × 10,071,423

16,584,356 (82.4)

15,857,639 (78.8)

22976

HHZ-3d 2

2 × 10,042,756

16,586,139 (82.6)

15,844,907 (78.9)

P28-3d 1

2 × 10,271,850

16,943,591 (82.5)

16,175,470 (78.8)

23017

P28-3d 2

2 × 10,093,202

16,568,958 (82.1)

15,817,307 (78.4)

H471-3d 1

2 × 10,087,890

16,669,962 (82.7)

15,912,430 (78.9)

22974

H471-3d 2

2 × 9,948,863

16,440,601 (82.7)

15,735,994 (79.1)

  1. Note: ck indicates well watered control; 1d and 3d indicate the drought treatment time; 1 and 2 in the first row indicate two replicates of each sample.