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Figure 1 | BMC Genomics

Figure 1

From: Transcriptome analysis during berry development provides insights into co-regulated and altered gene expression between a seeded wine grape variety and its seedless somatic variant

Figure 1

The eighteen relevant categories of triplets of significance. A red line indicates a significant up-regulation, a blue line a significant down-regulation, and a gray dashed line a non-significant difference between time points (the first position in the triplet corresponds to the shift from stage E-L 15 to E-L 27, the second position to the shift from stage E-L 27 to E-L 38 and the third position to the shift from stage E-L 15 to E-L 38). All DE genes for both the wild-type and the mutant formed 18 groups of differential expression patterns and the numbers of genes that fell within each group are shown in Table 3. Group 1 contains positively regulated genes along the whole time course; groups 2 and 3 consist of induced genes from stage E-L 15 to stage E-L 27, with no significant change afterwards; groups 4, 5 and 6 contain induced genes from stage E-L 15 to stage E-L 27, followed by a significant decrease in their expression; groups 7, 8 and 9 consist of stable genes from stage E-L 15 to stage E-L 27, with induced expression from stage E-L 15 or E-L 27 to stage E-L 38. Groups 10, 11 and 12 are made up of stable genes from stage E-L 15 to stage E-L 27 with reduced expression from stage E-L 15 or E-L 27 to stage E-L 38; groups 13, 14 and 15 contain repressed genes from stage E-L 15 to stage E-L 27, followed by a significant induction in their expression; groups 16 and 17 contain repressed genes from stage E-L 15 to stage E-L 27, with no significant subsequent change; group 18 contains negatively regulated genes along the whole time course.

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