Guanine quadruplexes are formed by specific regions of human transposable elements

BMC Genomics

Table 1 Oligonucleotides used in this study

Number	Name	Sequence	Length [nt]
1	L1_1	TAGGTGCTC GGGG TCA GGGG TCA GGGG TCA GGG ACCCACTTG	42
2	L1_2	ATCACACTCT GGGG TGTTGT GGG T GGGGGG A GGGGGG AGGATAGCATT GGG AGATATACC	60
3	HERV_1	AAAGAGTCA GGG AA GGG AGATAA GGG T GGGG CCGTTTTAT	40
4	HERV_2	TAAATTGCT GGG CA GGGGGGG A GGG CTAGTCACG	34
5	SVA-A_HEX	GGAGATCAA GGG AAA GGGGG AGA GGG AGA GGG AGAGGCCAA	41
6	SVA-CF_VNTR	CGCCCGTCC GGG A GGG AGGT GGGGGGGG TCAGCCCCC	37
7	SVA-C_HEX	GGAGACCGT GGGG AGA GGG AGA GGG A GGGGG AGAGGAGAC	40
8	SVA-BF_VNTR	GCCCCGTCC GGG A GGG AGGT GGGGGGG TCAGCCCCC	36
9	SVA-F_HEX	GGAGAGAGA GGG AGA GGG AGA GGG AGA GGG AGA GGG AGAGTGCTG	45
10	SVA-F_VNTR	GTGCCATCC GGG A GGG AGGT GGGGGGG TCAGCCCCC	36
11	ALU-S_1	CCAGCACTTT GGG AGGCC GGG T GGG T GGG TCACCTGAGG	39
12	ALU-S_2	CCAGCACTTT GGG A GGG T GGG T GGG TGGATCACTT	35

Names and the sequences of oligonucleotides are shown. Clusters of three or more guanines are shown as bold.

ISSN: 1471-2164