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Table 3 Total number of mCs and their methylation levels [%] in dependence on nucleotide context

From: Whole genome sequencing and methylome analysis of the wild guinea pig

Library

mCG

mCHG

mCHH

MEBS-PE_1

130,680,264

1,801,270

3,543,614

90.76%

0.79%

0.91%

MEBS-PE_2

102,257,162

1,290,501

2,858,916

90.60%

0.80%

0.93%

  1. Presence of mC depending on the immediate following nucleotides in which H represents non-G bases (H = A, T or C). The 100% reference value differs per column as percentages were calculated for mCs being part of mCGs according to the following equation: (Ʃ mCG/Ʃ (mCG + CG)) × 100 = % mCs of CGs. Accordingly, calculations were carried out for mCs being part of mCHGs and mCHHs.
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BMC Genomics

ISSN: 1471-2164

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