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Table 2 TDFs associated with plant defense response, response to oxidative stress and response to wounding

From: Gene expression profiling by cDNA-AFLP reveals potential candidate genes for partial resistance of ‘Président Roulin’ against Venturia inaequalis

TDF

Expression patterna

Annotation

GO annotationsb

1AU61′

IIb

+

e3 sumo-protein ligase siz1

P:induced systemic resistance; P:negative regulation of systemic acquired resistance

37DU41

IIb

+

cysteine proteinase inhibitor

P:defense response

43CU118

IIb

-

tmv resistance protein

P:defense response; P:innate immune response

43DU149

IIb

+

peroxidase

P:response to oxidative stress

43DU149′

IIb

+

nucleotide binding site leucine-rich repeat disease resistance protein

P:defense response

44AU9

IIb

+

LRR receptor kinase-like protein

P:defense response

51HU129′

IIb

+

tocopherol cyclase

P:regulation of defense response

56 AU33′

IIb

+

nbs-lrr resistance protein

P:defense response

14GU213

IIa

+

TMV resistance protein N-like

P:innate immune response; P:defense response

33FU130′

IIa

-

Avr9/Cf-9 rapidly elicited protein

P:response to wounding

34EU#2

IIa

+

12-oxophytodienoate reductase

P:response to wounding

34CU81′

IIa

+

nadp-dependent oxidoreductase

P:response to oxidative stress

34FU145′

IIa

+

disease resistance protein

P:defense response; P:innate immune response

41CU29′

IIa

+

protein bonzai 3-like

P:positive regulation of cellular defense response

42AU1

IIa

+

nad-dependent epimerase dehydratase

P:defense response to bacterium

46CU57′

IIa

+

cc-nbs-lrr resistance protein

P:defense response

47CU77′

IIa

+

ferredoxin-nadp + reductase

P:defense response to bacterium

54DU58

IIa

+

progesterone 5-beta-reductase

P:response to wounding

55BU33

IIa

+

multidrug resistance protein abc transporter family

P:response to wounding

34DU#2

I

 

adp-ribosylation factor gtpase-activating protein agd2-like

P:systemic acquired resistance

43BU45

I

 

proteasome subunit beta type-6

P:regulation of plant-type hypersensitive response

43CU113′

I

 

type ii peroxiredoxin

P:response to oxidative stress

43HU225

I

 

cell wall-associated hydrolase

P:response to oxidative stress

44CU85

I

 

acetylornithine aminotransferase

P:defense response to bacterium

44HU193′

I

 

disease resistance protein at3g14460-like

P:defense response

45CU49

I

 

formamidopyrimidine-dna glycosylase

P:response to oxidative stress

52BU9

I

 

nad-dependent epimerase dehydratase

P:defense response to bacterium

  1. aTDF Expression pattern according to the cDNA-AFLP (induced + or repressed -) at 48 hpi by V. inaequalis: genotype-specific TDFs (I), pathogen-responsive TDFs expressed in common by both genotypes (IIa) and pathogen-responsive and genotype specific TDFs (IIb).
  2. bGO annotations were made using the automatic bioinformatics software Blast2GO.